PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013638203.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 396aa MW: 45748.1 Da PI: 7.368 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 88.4 | 7.9e-28 | 78 | 159 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWee+s+kmre+gf rsp++C++kw+nl k+ykk k++++++ +s +++y++++e XP_013638203.1 78 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEEISAKMREKGFDRSPTMCTDKWRNLLKEYKKAKHHDRGN---VSAKMSYYKEIE 159 ********************************************************************95...77889****998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-4 | 68 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.072 | 70 | 134 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0095 | 74 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 9.16E-31 | 76 | 141 | No hit | No description |
Pfam | PF13837 | 1.0E-20 | 77 | 160 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MFVSDKPRPN DFYKDDNTNS STAARNMIID GDLQPHNQNH HHHNQHHHNH LQPQQILLRE 60 SSGEDHEVKA PKKRAETWVQ DETRSLIMFR RGMDGLFNTS KSNKHLWEEI SAKMREKGFD 120 RSPTMCTDKW RNLLKEYKKA KHHDRGNVSA KMSYYKEIED ILRERSKKVT QYSKSPNTPP 180 IAKVDSFMQF TDKGFDDPSI SFGSVEANGR PGLNLERSLD HDGHPLAITT VDAVPANGVP 240 PWNWRETPGN GGDAHGQPFG GRVITVKFGD YTRRIGIDGT AEAIKETIRS AFRLRTRRAF 300 WLEDEDQVVR CLDRDMPLGN YLLHVDGGVA IRVCHYDESN QLPVHTEEKI FYTEEDYRDF 360 LARRGWTYLQ VDGFRNIDNM DDLQAGAVYR GVRERM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2jmw_A | 1e-53 | 72 | 157 | 1 | 86 | DNA binding protein GT-1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00004 | PBM | Transfer from 920224 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013638203.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228305 | 0.0 | AK228305.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-C23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638203.1 | 0.0 | PREDICTED: trihelix transcription factor GT-1-like | ||||
Swissprot | Q9FX53 | 0.0 | TGT1_ARATH; Trihelix transcription factor GT-1 | ||||
TrEMBL | A0A0D3C9T7 | 0.0 | A0A0D3C9T7_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g017510.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2891 | 27 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13450.1 | 0.0 | Trihelix family protein |
Publications ? help Back to Top | |||
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