PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637942.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 343aa MW: 38560.7 Da PI: 6.7288 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.1 | 5.3e-12 | 203 | 228 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF H+ XP_013637942.1 203 YQPDICKDYKETGYCGYGDSCKFLHD 228 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.57E-9 | 201 | 234 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.009 | 202 | 230 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.4E-8 | 202 | 229 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-13 | 203 | 233 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 203 | 228 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 2.3E-13 | 262 | 319 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 3.79E-13 | 277 | 320 | No hit | No description |
Pfam | PF13920 | 5.0E-9 | 277 | 319 | No hit | No description |
SMART | SM00184 | 5.2E-5 | 278 | 315 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 10.601 | 278 | 316 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 1.97E-8 | 278 | 319 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 293 | 302 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MSDSGGEPKT SQQEEASQPE SQSQSKQVCT FFKKPSKAKN LRKRPAADAD EEDADSKSET 60 SILNNLKKAA KPDNKLFFSS GPSKTSSTTT GEAPEKAVVF HYDSSKEIQV QNDSRATATL 120 ETETDFNQDA RAIRERVLKR ADEALKGNKN KASDEKLYTG IHGYTDHKAG FRREQTISSE 180 KAGGSHGPLR ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFLHDRG DYKPGWQIEK 240 EWEEAEKIRK RNKAMGVEDE DDDDADSEED EDALPFACFI CREAFVDPVV TKCKHYFCEH 300 CALKHHTKNK KCFVCNQPTM GIFNAAHEIK KRMAEERSKA QGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 8e-70 | 27 | 342 | 13 | 326 | RING finger protein 113A |
5z58_M | 8e-70 | 27 | 342 | 13 | 326 | RING finger protein 113A |
6ff4_t | 8e-70 | 27 | 342 | 13 | 326 | RING finger protein 113A |
6ff7_t | 8e-70 | 27 | 342 | 13 | 326 | RING finger protein 113A |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013637942.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637940.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_013637941.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Refseq | XP_013637942.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 1 | ||||
Swissprot | Q8GX84 | 0.0 | C3H1_ARATH; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A0D3C6Y5 | 0.0 | A0A0D3C6Y5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EAJ4 | 0.0 | A0A3P6EAJ4_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g002540.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 0.0 | C3H family protein |