PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637941.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 343aa    MW: 38560.7 Da    PI: 6.7288
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637941.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-12203228126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     y   +C+++ +tG+C yGd+CkF H+
  XP_013637941.1 203 YQPDICKDYKETGYCGYGDSCKFLHD 228
                     67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.57E-9201234IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009202230IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8202229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-13203233IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-9203228IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.3E-13262319IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578503.79E-13277320No hitNo description
PfamPF139205.0E-9277319No hitNo description
SMARTSM001845.2E-5278315IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.601278316IPR001841Zinc finger, RING-type
CDDcd001621.97E-8278319No hitNo description
PROSITE patternPS005180293302IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSDSGGEPKT SQQEEASQPE SQSQSKQVCT FFKKPSKAKN LRKRPAADAD EEDADSKSET  60
SILNNLKKAA KPDNKLFFSS GPSKTSSTTT GEAPEKAVVF HYDSSKEIQV QNDSRATATL  120
ETETDFNQDA RAIRERVLKR ADEALKGNKN KASDEKLYTG IHGYTDHKAG FRREQTISSE  180
KAGGSHGPLR ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFLHDRG DYKPGWQIEK  240
EWEEAEKIRK RNKAMGVEDE DDDDADSEED EDALPFACFI CREAFVDPVV TKCKHYFCEH  300
CALKHHTKNK KCFVCNQPTM GIFNAAHEIK KRMAEERSKA QGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M8e-702734213326RING finger protein 113A
5z58_M8e-702734213326RING finger protein 113A
6ff4_t8e-702734213326RING finger protein 113A
6ff7_t8e-702734213326RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637941.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637940.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_013637941.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
RefseqXP_013637942.10.0PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0D3C6Y50.0A0A0D3C6Y5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6EAJ40.0A0A3P6EAJ4_BRAOL; Uncharacterized protein
STRINGBo5g002540.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein