PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637872.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 366aa    MW: 40927.7 Da    PI: 7.8647
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637872.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-0782107127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ykt+ C  f + GtC  Gd C+FaHg+
  XP_013637872.1  82 YKTRMCAKFKA-GTCMNGDPCNFAHGM 107
                     9**********.*************95 PP
2zf-CCCH17.19.9e-061761901125
                     GTS.--TTTTT-SS-S CS
         zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                       G +C+yGdrC+F H
  XP_013637872.1 176 F-GeECPYGDRCNFVH 190
                     5.449*********** PP
3zf-CCCH361.2e-11253278127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt++C+ f   G+C++Gd+C+FaHg+
  XP_013637872.1 253 WKTRICMKFEN-GQCPFGDNCHFAHGQ 278
                     8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.4E-1579114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-880112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.06181108IPR000571Zinc finger, CCCH-type
SMARTSM003560.005181107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6165191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.779165193IPR000571Zinc finger, CCCH-type
SMARTSM003560.018165192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-7167191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-9248282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-14249281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.882252279IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7252278IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9253278IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDSSYSDSRP MFVQSPWNQT HTNDSMPYPM NNEQSESQSQ PSLKRPRLHD DTVFTPTSNN  60
SSWMAPPSNT PPMNKGTANI FYKTRMCAKF KAGTCMNGDP CNFAHGMEDL RQPPSNWQEI  120
VGPPPPAVQD RARERERERE RERERERPSS SSVSASNWED DQKIILRMKL CRKFCFGEEC  180
PYGDRCNFVH QDLSKFRDES GKLRESLAIS VGTDPASVEN GGGTGSHQVE VNRRGGIPVP  240
ASLNNGVVKT VYWKTRICMK FENGQCPFGD NCHFAHGQAE LLYYSGETVN AAASLSKQTV  300
VPGNEAFAMK PSAAQVVTAD SSGLNDEGRR KKCLLKWSDS KKINRIYGDW IDDLPVGQKS  360
TKPVES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136146RERERERERER
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637872.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT811e-177C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0D3ACC30.0A0A0D3ACC3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G3E60.0A0A3P6G3E6_BRAOL; Uncharacterized protein
STRINGBo1g114770.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-174C3H family protein