PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637849.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 399aa    MW: 45762.9 Da    PI: 6.3161
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637849.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.37.8e-2793187185
        trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                     +Wt+++v++Li+a+++++++++ +          +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++
  XP_013637849.1  93 KWTDKMVKLLITAVSYIGDDSSMDGgsrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDSI 187
                     7**************8888887543345556677**********************************************669999998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2491214No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDGNFPQGGV VRGGPSSYGG FDLQTSMNQH RHSLHEGLPF AMVTAQTCGH HHNVAMTEQH  60
KGDKNSVSDD DEPSFNEEGG EKSTKGSPWQ RVKWTDKMVK LLITAVSYIG DDSSMDGGSR  120
RKFAALQKKG KWKSVSKVMS ERGYHVSPQQ CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN  180
PALLDSIGYL NDKEKDDVRK IMSSKHLFYE EMCSYHNGNR LHLPHDLALQ RSLKLALRNR  240
DDHESHHQVE DVEDDDGEGE EHDEYDDFTH GGCGGGALKK ARQSHSHEDV DHPGHQVSSL  300
ECNKLSLSQM PFPQGGEESE RSALMQKQWI ESRTLQLEEQ KLQIQVELLE LEKQRFRWER  360
FSKKRDQELE RMKMENERMK LENDRMGLEL KQRELGVEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637849.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0458501e-143AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankAY0913781e-143AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds.
GenBankCP0026841e-143CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16F41e-143AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637848.10.0PREDICTED: uncharacterized protein LOC106343239
RefseqXP_013637849.10.0PREDICTED: uncharacterized protein LOC106343239
TrEMBLA0A0D3CC020.0A0A0D3CC02_BRAOL; Uncharacterized protein
STRINGBo5g033090.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.10.0sequence-specific DNA binding transcription factors