PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013637848.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Trihelix | ||||||||
Protein Properties | Length: 399aa MW: 45762.9 Da PI: 6.3161 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 85.3 | 7.8e-27 | 93 | 187 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++++++ + +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ +++++++ +++d++ XP_013637848.1 93 KWTDKMVKLLITAVSYIGDDSSMDGgsrrkfaalQKKGKWKSVSKVMSERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCQVVENPALLDSI 187 7**************8888887543345556677**********************************************669999998888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.5E-24 | 91 | 214 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MDGNFPQGGV VRGGPSSYGG FDLQTSMNQH RHSLHEGLPF AMVTAQTCGH HHNVAMTEQH 60 KGDKNSVSDD DEPSFNEEGG EKSTKGSPWQ RVKWTDKMVK LLITAVSYIG DDSSMDGGSR 120 RKFAALQKKG KWKSVSKVMS ERGYHVSPQQ CEDKFNDLNK RYKKLNDMLG RGTSCQVVEN 180 PALLDSIGYL NDKEKDDVRK IMSSKHLFYE EMCSYHNGNR LHLPHDLALQ RSLKLALRNR 240 DDHESHHQVE DVEDDDGEGE EHDEYDDFTH GGCGGGALKK ARQSHSHEDV DHPGHQVSSL 300 ECNKLSLSQM PFPQGGEESE RSALMQKQWI ESRTLQLEEQ KLQIQVELLE LEKQRFRWER 360 FSKKRDQELE RMKMENERMK LENDRMGLEL KQRELGVEL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013637848.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045850 | 1e-143 | AY045850.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds. | |||
GenBank | AY091378 | 1e-143 | AY091378.1 Arabidopsis thaliana unknown protein (At1g21200) mRNA, complete cds. | |||
GenBank | CP002684 | 1e-143 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F16F4 | 1e-143 | AC036104.3 Sequence of BAC F16F4 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013637848.1 | 0.0 | PREDICTED: uncharacterized protein LOC106343239 | ||||
Refseq | XP_013637849.1 | 0.0 | PREDICTED: uncharacterized protein LOC106343239 | ||||
TrEMBL | A0A0D3CC02 | 0.0 | A0A0D3CC02_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g033090.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5042 | 27 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 0.0 | sequence-specific DNA binding transcription factors |