PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637276.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 353aa    MW: 39552.2 Da    PI: 8.0187
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.4e-18252285134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C +tkTp+WR gp g+ktLCnaCG++y++ +
  XP_013637276.1 252 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 285
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.1E-9320342IPR016679Transcription factor, GATA, plant
SMARTSM004018.0E-16246296IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.78246282IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-14250309No hitNo description
Gene3DG3DSA:3.30.50.102.7E-14250283IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.76E-14251298No hitNo description
PROSITE patternPS003440252277IPR000679Zinc finger, GATA-type
PfamPF003204.7E-16252285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009845Biological Processseed germination
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MVLIISEKNQ RSYLLYCKRK MFGQSFPEDL DCGNFFDNMD DLLDFPGGDI DVGFSIGDSD  60
SFPNIWTTHH DTWPAASEPV FASNTNSDSS PELYVPFEDI VKVERPQSFV EESLVEKKED  120
SFFTNTDSSS SHSQFRSSSP VSVLESSSSS SHTTNTTSLV LPGKHGRPRT KRPRPQVQEK  180
DKVNDTVFGA DSRLIIRIPK QFLSDHSKMI TKKKKKKAKV VSSSSWSEID LETNGNNNVD  240
SCSSEQNPVR KCMHCEVTKT PQWRLGPMGP KTLCNACGVR YKSGRLFPEY RPAASPTFTP  300
ALHSNSHKKV AEMRNKRCSS GSYTNEENDL HDLVLNNAYI GIGVGKSQRV DKF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170174KRPRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637276.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534610.0AK353461.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-37-G07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637276.10.0PREDICTED: GATA transcription factor 8 isoform X1
SwissprotQ9SV301e-168GATA8_ARATH; GATA transcription factor 8
TrEMBLA0A0D3BXX30.0A0A0D3BXX3_BRAOL; GATA transcription factor
TrEMBLA0A3P6C6I00.0A0A3P6C6I0_BRAOL; GATA transcription factor
STRINGBo4g118340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49752751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-139GATA family protein
Publications ? help Back to Top
  1. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]