PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637252.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 652aa    MW: 74370.7 Da    PI: 7.1617
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07442484146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el v+  k+ G++ W+t a  mg  + ++++k+ w+ 
   XP_013637252.1 442 KGVWTKEDLELVVQHQKKRGND-WRTLADAMG--KHRNHVKDAWRR 484
                      799*******************.********9..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0093368439IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-4368425IPR009057Homeodomain-like
PROSITE profilePS500904.031371424IPR017877Myb-like domain
PROSITE profilePS500906.876437486IPR017877Myb-like domain
SMARTSM007170.57441488IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-7442503IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-5442484IPR009057Homeodomain-like
PfamPF139211.0E-9445503No hitNo description
PROSITE profilePS500906.702487555IPR017877Myb-like domain
SMARTSM0071725491557IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-4491555IPR009057Homeodomain-like
PROSITE profilePS500907.422557610IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MVMSANFFKL DSPESDTDEE RTTRSKVAVQ SQGTDAEHSS MKKKKKKASV EKPDSEDGGK  60
KSKKKKKKKV SGGDEIGDTE KALVNTDDDD DGKRDTGKRK RVDDLGDAAH KPKTKKKKTI  120
ADSENSFSSA NSSKKKSKAQ VNNTDCTKDA NQLQTEDLEA DLNTSTKDTK KKRKKKQTEV  180
PEVGEDNKDS TEDAENTQTE NSEADLKKSS KKKKQIDDPE VEEDNKTQIE NSEAGLNKST  240
KVPKKKRKKK QIEAPEVEEN QKDSSEDAEN TQTGNSEAEG NYLNSPEIAK KKSKKKKKKK  300
QSEDPEAEQN NKGKRKKKQK GSKSDEVLTT PSPKSAKKVN FSDQVEVFPA ESEESDEEEK  360
EEKVDLVRGK RFTEEEDELI KKSVLEYVDN HALGDEGINM VMNCKAHKQV RGCWKEIATA  420
LPWRPYTGVY YRAHTLFEEG SKGVWTKEDL ELVVQHQKKR GNDWRTLADA MGKHRNHVKD  480
AWRRIRLASK KRGHWSMEEY QSLFDLVNKD LRIKVFKEKH SKHGMLRDNI PWMAISDELG  540
TRDHAVCCLK WYDQLTSPMV AKGIWANVDD YRLLDELTNL DAACVDDMDW DNILDNRDGD  600
VCRSRWNQMV NHIGIPGSKT FAEQVEILSQ RYCPDIAEDR EDFDNRPFDP ED
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242249PKKKRKKK
2244248KKRKK
3290298KKSKKKKKK
4293299KKKKKKK
5297317KKKQSEDPEAEQNNKGKRKKK
6312318GKRKKKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.93320.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637252.10.0PREDICTED: RNA polymerase I termination factor isoform X3
RefseqXP_013637255.10.0PREDICTED: RNA polymerase I termination factor isoform X4
TrEMBLA0A0D3C0C80.0A0A0D3C0C8_BRAOL; Uncharacterized protein
STRINGBo4g140750.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein