PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637250.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 671aa    MW: 76552.2 Da    PI: 8.1872
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637250.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-07461503146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g WT+e+ el v+  k+ G++ W+t a  mg  + ++++k+ w+ 
   XP_013637250.1 461 KGVWTKEDLELVVQHQKKRGND-WRTLADAMG--KHRNHVKDAWRR 503
                      799*******************.********9..7899***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-4387444IPR009057Homeodomain-like
SMARTSM007170.0093387458IPR001005SANT/Myb domain
PROSITE profilePS500904.031390443IPR017877Myb-like domain
PROSITE profilePS500906.876456505IPR017877Myb-like domain
SMARTSM007170.57460507IPR001005SANT/Myb domain
SuperFamilySSF466893.07E-7461522IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-5461503IPR009057Homeodomain-like
PfamPF139211.1E-9464522No hitNo description
PROSITE profilePS500906.702506574IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-4510574IPR009057Homeodomain-like
SMARTSM0071725510576IPR001005SANT/Myb domain
PROSITE profilePS500907.422576629IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MVMSANFFKL DSPESDTDEE RTTRSKVAVQ SQGTDAEHSS MKKKKKKASV EKPDSEDGGK  60
KSKKKKKKKV SGGDEIGDTE KALVNTDDDD DGKRDTGKRK RVDDLGDAAH KPKTKKKKTI  120
ADSENSFSSA NSSKKKSKAQ VNNTDCTKDA NQLQTEDLEA DLNKSKKKRK KKQTDDPEAG  180
LNTSTKDTKK KRKKKQTEVP EVGEDNKDST EDAENTQTEN SEADLKKSSK KKKQIDDPEV  240
EEDNKTQIEN SEAGLNKSTK VPKKKRKKKQ IEAPEVEENQ KDSSEDAENT QTGNSEAEGN  300
YLNSPEIAKK KSKKKKKKKQ SEDPEAEQNN KGKRKKKQKG SKSDEVLTTP SPKSAKKVNF  360
SDQVEVFPAE SEESDEEEKE EKVDLVRGKR FTEEEDELIK KSVLEYVDNH ALGDEGINMV  420
MNCKAHKQVR GCWKEIATAL PWRPYTGVYY RAHTLFEEGS KGVWTKEDLE LVVQHQKKRG  480
NDWRTLADAM GKHRNHVKDA WRRIRLASKK RGHWSMEEYQ SLFDLVNKDL RIKVFKEKHS  540
KHGMLRDNIP WMAISDELGT RDHAVCCLKW YDQLTSPMVA KGIWANVDDY RLLDELTNLD  600
AACVDDMDWD NILDNRDGDV CRSRWNQMVN HIGIPGSKTF AEQVEILSQR YCPDIAEDRE  660
DFDNRPFDPE D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261268PKKKRKKK
2263267KKRKK
3309317KKSKKKKKK
4312318KKKKKKK
5316336KKKQSEDPEAEQNNKGKRKKK
6331337GKRKKKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bol.93320.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637250.10.0PREDICTED: DNA-binding protein REB1 isoform X1
TrEMBLA0A0D3C0C80.0A0A0D3C0C8_BRAOL; Uncharacterized protein
STRINGBo4g140750.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein