PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637175.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 599aa    MW: 67354.7 Da    PI: 9.8622
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-143484248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48
                     + W t+E++ll +avk++G+++W+++a+++g    +  ++ +c++++q+++
   XP_013637175.1 34 QVWGTWEELLLTCAVKRHGSKDWDSVAKEVGsrssLDASGTSCRLKYQDLK 84
                     68**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.12E-73287IPR009057Homeodomain-like
SMARTSM007172.0E-83286IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-53486IPR009057Homeodomain-like
PfamPF002494.6E-133484IPR001005SANT/Myb domain
PROSITE profilePS500906.333684IPR017877Myb-like domain
CDDcd001676.91E-83684No hitNo description
Gene3DG3DSA:1.20.920.103.3E-19257380IPR001487Bromodomain
SuperFamilySSF473701.03E-17261368IPR001487Bromodomain
SMARTSM002979.4E-19261370IPR001487Bromodomain
CDDcd043692.34E-15272365No hitNo description
PfamPF004391.6E-11274355IPR001487Bromodomain
PROSITE profilePS5001412.927280351IPR001487Bromodomain
PROSITE patternPS006330286343IPR018359Bromodomain, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MNDDYTTNIH SCSDSDNKRN GDGNGNGNQY QISQVWGTWE ELLLTCAVKR HGSKDWDSVA  60
KEVGSRSSLD ASGTSCRLKY QDLKRRFQDS VDDDGRGNNE AVAEDEEDTD GEIPWLEQLR  120
SLRVAELRRD VQRCDESILW LQLKVKKLEE ENDGHDGDDR PDLVEDGSKA VRSINDETEP  180
TRLNRETSNS TASVGKIADH ERLSGDNSKN PDPDHMAATE EEEGTISRRS GMSQSVELGE  240
SGTSTVNRKR KGHEYMSGED NIKPDGNQSQ PLIEIIKLIR SHPRGSVFAS RLRSQETKDY  300
KRVIRQHLDI KTIEKKMEKG SYVSSSLSFY RDLKLLFTNA IVFFPTSYSE YVAAQELRTL  360
VSNEMKKTTG ISSHRVIKSE GGSLVSKQKT SAPPLVGCKK KSFASKKALP SSSSFKQKDE  420
IQVSEEKDVT TTAIATRSSR RTSKGMEVVA KDTKMGRDKN SNKKQTDSKA DSSNDDDEKE  480
ETPKTEKKMA SEKKKKKSVA EFLKRIKNNS PHKGKETTSK DQKKSDGNVK KDNSKAKPRE  540
LRSDGTGKKK VEVESTENKR SSKRKQLKKE AEEETATATR KRGRESGKDN QQPKKRNKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1558565KRSSKRKQ
2592598PKKRNKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637175.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637174.10.0PREDICTED: uncharacterized protein LOC106342710 isoform X1
RefseqXP_013637175.10.0PREDICTED: uncharacterized protein LOC106342710 isoform X1
TrEMBLA0A0D3BWR20.0A0A0D3BWR2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C4W90.0A0A3P6C4W9_BRAOL; Uncharacterized protein
STRINGBo4g106310.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.10.0DNA-binding bromodomain-containing protein