PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637009.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 609aa    MW: 67677.4 Da    PI: 6.2897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637009.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000514464831355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  XP_013637009.1 446 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 483
                     67799************55......5566667777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-306153IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000838.12E-4427484No hitNo description
PROSITE profilePS5088811.28433482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-4446501IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-5446489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
MGSTSQEILR SLCSNTDWKY AVFWKLNHRS RMVLTLEDAY YDNHRHNDSL KNMHGAHDPL  60
GLALAKMAYH VYSLGEGIIG HVAVSGEHQW LFPEYYDNYH SVSEFHNVWE SQISAGIKTV  120
LVVAVGPCGV VQLGSLRKID EDVTLVNHIK HMFLALKDPL ADHAANLMQY NMNNSLCLPK  180
LPSECLHVEA FSNCSGEVGK AMEVEESSFL TQYPSLHPYL KNHALNNTSS SALAIEAERL  240
ITDQSYPGLD SSTFHNLSEP MPERRCESSR FDALISSGYT FPGSELLEAL GSGFKQTSRG  300
LEELVKSEHG SATRPTDDNM SHSQLTFDSA PENLLDAVVA NVCHSDGNAR DDIFSSRSVQ  360
SFLTSMEMAE PSGQNNHIMM NQLPPAAEVD TQQNTSDICG AFSSIGFSST CPSSSSDHFQ  420
TSLEMPKKNK KRAKPGESSR PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIKHML  480
FLQNVTKHAD KLSKSANTKM QQKETGAQGS TCAVEVGGHL QVCSIIVENL NKHGMVLIEM  540
LCEECSHFLE ISNVIRSLDL TILRGVTEAQ GDKTWICFVV ESQSNKVMQR MDILWSLVQI  600
FQPKANGKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate root development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529850.0AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637009.10.0PREDICTED: transcription factor bHLH155-like
SwissprotQ58G010.0LHWL3_ARATH; Transcription factor bHLH155
TrEMBLA0A0D3BT970.0A0A0D3BT97_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BMG80.0A0A3P6BMG8_BRAOL; Uncharacterized protein
STRINGBo4g052580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20832030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.20.0conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Ohashi-Ito K,Matsukawa M,Fukuda H
    An atypical bHLH transcription factor regulates early xylem development downstream of auxin.
    Plant Cell Physiol., 2013. 54(3): p. 398-405
    [PMID:23359424]