PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G31280.2
Common NameCPUORF7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 723aa    MW: 80136.6 Da    PI: 6.0966
Description conserved peptide upstream open reading frame 7
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G31280.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000575295661355
                  HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  AT2G31280.2 529 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 566
                  67799************54......5555556666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.8E-83370IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142151.1E-1086144IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000835.60E-4510567No hitNo description
PROSITE profilePS5088811.28516565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-5529584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-4529585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MGKRQISQDE VGPPIKPRAG LRREQAGRGS YREILKSFCF NTDWDYAVFW QLNHRGSRMV  60
LTLEDAYYDH HGTNMHGAHD PLGLAVAKMS YHVYSLGEGI VGQVAVSGEH QWVFPENYNN  120
CNSAFETILV VAVGPCGVVQ LGSLCKPKMP SEGLHAEAFP DCSGEVDKAM DVEESNILTQ  180
YKTRRSDSMP YNTPSSCLVM EKAAQVVGGR EVVQGSTCGS YSGVTFGFPV DLVGAKHENQ  240
VGTNIIRDAP HVGMTSGCKD SRDLDPNLHL YMKNHVLNDT STSALAIEAE RLITSQSYPR  300
LDSTFQATSR TDKESSYHNE VFQLSENQGN KYIKETERML GRNCESSQFD ALISSGYTFA  360
GSELLEALGS AFKQTNTGQE ELLKSEHGST MRPTDDMSHS QLTFDPGPEN LLDAVVANVC  420
QRDGNARDDM MSSRSVQSLL TNMELAEPSG QKKHNIVNPI NSAMNQPPMA EVDTQQNSSD  480
ICGAFSSIGF SSTYPSSSSD QFQTSLDIPK KNKKRAKPGE SSRPRPRDRQ LIQDRIKELR  540
ELVPNGSKCS IDSLLERTIK HMLFLQNVTK HAEKLSKSAN EKMQQKETGM QGSSCAVEVG  600
GHLQVSSIIV ENLNKQGMVL IEFNLCLNSS PKFCECVLKV FLGIGQMLCE ECGHFLEIAN  660
VIRSLDLVIL RGFTETQGEK TWICFVTEVG SRITQFMKEI PKQIKVFSLV LIELWISMIY  720
MTD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.433760.0leaf| seed| silique
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasAT2G31280
AtGenExpressAT2G31280
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate root development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G31280.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G31280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5760420.0AJ576042.1 Arabidopsis thaliana mRNA for bHLH transcription factor (bHLH gamma gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001031453.10.0transcription factor bHLH155-like protein
SwissprotQ58G010.0LHWL3_ARATH; Transcription factor bHLH155
TrEMBLD7LD130.0D7LD13_ARALL; Predicted protein
STRINGAT2G31280.30.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  3. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  4. Hilson P, et al.
    Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications.
    Genome Res., 2004. 14(10B): p. 2176-89
    [PMID:15489341]
  5. Ohashi-Ito K,Bergmann DC
    Regulation of the Arabidopsis root vascular initial population by LONESOME HIGHWAY.
    Development, 2007. 134(16): p. 2959-68
    [PMID:17626058]
  6. Hayden CA,Jorgensen RA
    Identification of novel conserved peptide uORF homology groups in Arabidopsis and rice reveals ancient eukaryotic origin of select groups and preferential association with transcription factor-encoding genes.
    BMC Biol., 2007. 5: p. 32
    [PMID:17663791]
  7. Ohashi-Ito K,Matsukawa M,Fukuda H
    An atypical bHLH transcription factor regulates early xylem development downstream of auxin.
    Plant Cell Physiol., 2013. 54(3): p. 398-405
    [PMID:23359424]
  8. Jones AM, et al.
    Border control--a membrane-linked interactome of Arabidopsis.
    Science, 2014. 344(6185): p. 711-6
    [PMID:24833385]