PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636457.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 395aa    MW: 44218.7 Da    PI: 8.0993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636457.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.4e-33236292258
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                     +Dgy+WrKYGqK vk+s+fprsYYrCt+a+C+vkk+vers +dp++v++tYeg+H+h
  XP_013636457.1 236 EDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVKKRVERSFRDPSTVVTTYEGQHTH 292
                     8******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-34220294IPR003657WRKY domain
SuperFamilySSF1182902.22E-28227293IPR003657WRKY domain
PROSITE profilePS5081130.963230295IPR003657WRKY domain
SMARTSM007741.0E-38235294IPR003657WRKY domain
PfamPF031069.8E-26236292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MTNIINSCTI ISPLSSLLSH HLSSLLVYIF FLSISVLARL LCFKLTVRVY NFYLLSWKLG  60
KKAMEFTSFY HPSSLSVWEF GDLMAAERDS FELLGSQQHH QLQGIAAASP HSFLLETLQP  120
QTQPFVKLPS ADSTIFQAPP SNGDATADKS VTSRVESFCS DHFLINSPAT PNSSSFSSAS  180
SEDANEEKAK REDQEEEEGH KKSDTNKQVK PKNNSLKRQR EPRVAFMTKS EVDHLEDGYR  240
WRKYGQKAVK NSPFPRSYYR CTTASCNVKK RVERSFRDPS TVVTTYEGQH THISPLMSRP  300
VPGGGFFGSS GVASNLGGNF GFPMESSTLI SPQFQQLVHY HQQQEVLSCF GGVGQYVNSH  360
THGYGDDERV KKSRGLVRDN GLLQDVVPCH MLKEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-272282951077Probable WRKY transcription factor 4
2lex_A6e-272282951077Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636457.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300410.0KF430041.1 Brassica rapa WRKY transcription factor 23 (WRKY23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636457.10.0PREDICTED: probable WRKY transcription factor 23
SwissprotO229001e-142WRK23_ARATH; WRKY transcription factor 23
TrEMBLA0A0D3C6P50.0A0A0D3C6P5_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CLS50.0A0A3P6CLS5_BRAOL; Uncharacterized protein
STRINGBo4g198560.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-114WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]