PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636192.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 1026aa    MW: 114781 Da    PI: 5.3304
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1180.61.8e-56201363118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwl++ ei++iL+n++k+++++e++t+p sgs++L++rk++ryfrkDG++w+kk+dgktv+E+he+LK g+v+vl+cyYah+++n++fqr
  XP_013636192.1  20 SEaRNRWLRPPEICEILQNYQKFQISTEPPTTPASGSVFLFDRKVLRYFRKDGHNWRKKRDGKTVKEAHERLKAGSVDVLHCYYAHGQDNEHFQR 114
                     4449******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+yw+L+eel++iv+vhylevk
  XP_013636192.1 115 RSYWMLQEELSHIVFVHYLEVK 136
                     *******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.08915141IPR005559CG-1 DNA-binding domain
SMARTSM010761.1E-8218136IPR005559CG-1 DNA-binding domain
PfamPF038591.9E-4921135IPR005559CG-1 DNA-binding domain
SuperFamilySSF812964.9E-16451534IPR014756Immunoglobulin E-set
CDDcd002044.03E-11613743No hitNo description
Gene3DG3DSA:1.25.40.201.9E-15614747IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.184617743IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-15629746IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.11684716IPR002110Ankyrin repeat
SuperFamilySSF525401.38E-8844897IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.92846868IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.029848876IPR000048IQ motif, EF-hand binding site
PfamPF006120.0041849867IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0011869891IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.468870894IPR000048IQ motif, EF-hand binding site
PfamPF006121.2E-4872891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010150Biological Processleaf senescence
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 1026 aa     Download sequence    Send to blast
MAEARRFSLN NELDVGQILS EARNRWLRPP EICEILQNYQ KFQISTEPPT TPASGSVFLF  60
DRKVLRYFRK DGHNWRKKRD GKTVKEAHER LKAGSVDVLH CYYAHGQDNE HFQRRSYWML  120
QEELSHIVFV HYLEVKGSRV STSYNRMQRT EDSTQETGEV YTSERNGYAS GSINQYDHSN  180
NQSQATDSAS VNGVHTPELE DAQSAYNQQG SPILYSHQTL QQPPATSFDP YYQMSLTPGD  240
SYQKEIHTIP SSTMVEKSRT INGPVVTNSI KNKKSIDSQT WEEILGNCGS GGEGLPMQPH  300
SEHEGLDQML QSYSFTMQDF ASLQESIVKS QNQELSSGLT SDRSMWFQGQ DIEPNALSNL  360
ASSEKAPYLS TMKQHLLDGA LGEEGLKKMD SFNRWMSKEL GELGDVGVTA DANESFTHSS  420
STAYWEEVES EDVSNGGYVM SPSLSKEQLF TIIDFAPNWT YVGCEVKVLV SGKFLKTAES  480
GEWCCMFGQT EVPADIIANG ILECVAPMHE AGRVPFYVTC SNRLACSEVR EFEYKVLESQ  540
GFDRDTDDSS TACNSIESLE ARFVKLLCSK SDCTHSSLPG GNDSDLSQVS EKISLLLFEN  600
DDQLDQMLMN EISQENMKNN LLQEALKESL HSWLLQKIAE GGKGPNVLDE GGQGVLHFAA  660
ALGYNWALEP TIVAGVSVDF RDVNGWTALH WAAFFGRELI IGSLIALGAS PGTLTDPNPD  720
FPSGSTPSDL AYANGYKGIA GYLSEYALRT HVSLLSLNEK NAETSLGAAV EAAPSPSSSA  780
LTDSLTAVRN ASQAAARIHQ VFRAQSFQKK QMKEFGDRKL GMSEERALSM LAPKTHRPGR  840
GHSDDSVQAA AIRIQNKFRG YKGRKDYLIT RQRIIKIQAH VRGYQVRKNY RKIIWSVGIL  900
EKVILRWRRK GAGLRGFKSD ALVTKMQYGT EKEEDDDFFK QGRKQTEERL EKALARVKSM  960
VQYPEARDQY RRLLNVVNDI QESKVEKALA NSEEATCFDD DLIDIEALLG DDDTLMMPMS  1020
STLWNV
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, carpels, and siliques, but not in stigmas or other parts of the flower. {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3'. Binds calmodulin in a calcium-dependent manner in vitro (PubMed:12218065). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance in association with CAMTA1 and CAMTA2 (PubMed:23581962). Required for the cold-induced expression of DREB1B/CBF1, DREB1C/CBF2, ZAT12 and GOLS3 (PubMed:19270186). Involved in response to cold. Contributes together with CAMTA5 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). Involved together with CAMTA2 and CAMTA4 in the positive regulation of a general stress response (GSR) (PubMed:25039701). Involved in the regulation of GSR amplitude downstream of MEKK1 (PubMed:25157030). Involved in the regulation of a set of genes involved in defense responses against pathogens (PubMed:18298954). Involved in the regulation of both basal resistance and systemic acquired resistance (SAR) (PubMed:21900483). Acts as negative regulator of plant immunity (PubMed:19122675, PubMed:21900483, PubMed:22345509, PubMed:28407487). Binds to the promoter of the defense-related gene EDS1 and represses its expression (PubMed:19122675). Binds to the promoter of the defense-related gene NDR1 and represses its expression (PubMed:22345509). Involved in defense against insects (PubMed:23072934, PubMed:22371088). Required for tolerance to the generalist herbivore Trichoplusia ni, and contributes to the positive regulation of genes associated with glucosinolate metabolism (PubMed:23072934). Required for tolerance to Bradysia impatiens larvae. Mediates herbivore-induced wound response (PubMed:22371088). Required for wound-induced jasmonate accumulation (PubMed:23072934, PubMed:22371088). Involved in the regulation of ethylene-induced senescence by binding to the promoter of the senescence-inducer gene EIN3 and repressing its expression (PubMed:22345509). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:18298954, ECO:0000269|PubMed:19122675, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:21900483, ECO:0000269|PubMed:22345509, ECO:0000269|PubMed:22371088, ECO:0000269|PubMed:23072934, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25157030, ECO:0000269|PubMed:28351986, ECO:0000269|PubMed:28407487, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00042PBMTransfer from AT2G22300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636192.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene and methyl jasmonate (PubMed:11162426, PubMed:12218065). Induced by infection with the fungal pathogen Golovinomyces cichoracearum (powdery mildew) and the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000 (PubMed:22345509). {ECO:0000269|PubMed:11162426, ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:22345509}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636192.10.0PREDICTED: calmodulin-binding transcription activator 3 isoform X2
SwissprotQ8GSA70.0CMTA3_ARATH; Calmodulin-binding transcription activator 3
TrEMBLA0A0D3C1600.0A0A0D3C160_BRAOL; Uncharacterized protein
STRINGBo4g149510.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1
Publications ? help Back to Top
  1. Zhang L,Du L,Shen C,Yang Y,Poovaiah BW
    Regulation of plant immunity through ubiquitin-mediated modulation of Ca(2+) -calmodulin-AtSR1/CAMTA3 signaling.
    Plant J., 2014. 78(2): p. 269-81
    [PMID:24528504]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Rahman H,Yang J,Xu YP,Munyampundu JP,Cai XZ
    Phylogeny of Plant CAMTAs and Role of AtCAMTAs in Nonhost Resistance to Xanthomonas oryzae pv. oryzae.
    Front Plant Sci, 2016. 7: p. 177
    [PMID:26973658]
  4. Benn G, et al.
    Plastidial metabolite MEcPP induces a transcriptionally centered stress-response hub via the transcription factor CAMTA3.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(31): p. 8855-60
    [PMID:27432993]
  5. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  6. Lolle S, et al.
    Matching NLR Immune Receptors to Autoimmunity in camta3 Mutants Using Antimorphic NLR Alleles.
    Cell Host Microbe, 2017. 21(4): p. 518-529.e4
    [PMID:28407487]
  7. Kim YS, et al.
    CAMTA-Mediated Regulation of Salicylic Acid Immunity Pathway Genes in Arabidopsis Exposed to Low Temperature and Pathogen Infection.
    Plant Cell, 2017. 29(10): p. 2465-2477
    [PMID:28982964]
  8. Jacob F, et al.
    A dominant-interfering camta3 mutation compromises primary transcriptional outputs mediated by both cell surface and intracellular immune receptors in Arabidopsis thaliana.
    New Phytol., 2018. 217(4): p. 1667-1680
    [PMID:29226970]