PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635691.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 234aa    MW: 27654.2 Da    PI: 6.5118
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.4e-19117171357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     k+ ++t+eql+ Le  F+++++++ e++ +L+k+lgL+ rq+ vWFqNr+a++k+
  XP_013635691.1 117 KKKKMTNEQLKLLEISFQEEMKLDPERKMKLSKELGLQPRQIAVWFQNRKARWKN 171
                     67899************************************************95 PP
2HD-ZIP_I/II109.52.3e-35117207292
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     kk+++++eq+klLE sF+ee kL+perK++l++eLglqprq+avWFqnr+AR+k+kqlE+ ye+L++++d + +e++ L++e  +L++ ++
  XP_013635691.1 117 KKKKMTNEQLKLLEISFQEEMKLDPERKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEHLYESLRQEFDIICQEKKLLQEELIQLKAMIR 207
                     9**************************************************************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-1994174IPR009057Homeodomain-like
PROSITE profilePS5007116.309112172IPR001356Homeobox domain
CDDcd000869.23E-16117173No hitNo description
PfamPF000465.6E-16117171IPR001356Homeobox domain
SMARTSM003894.8E-17117176IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-20119179IPR009057Homeodomain-like
PROSITE patternPS000270147170IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEEDNMECWS SPFINDQSSS NFIYPFHSFN NVSGKETNVC AWYLFMNSMC NSYHYLNHIE  60
NYSPLRNQIQ ENIYFVFLGT RVVTQGGPLH EHYYAPSAMV ESSFGEASNT NNGYETKKKK  120
MTNEQLKLLE ISFQEEMKLD PERKMKLSKE LGLQPRQIAV WFQNRKARWK NKQLEHLYES  180
LRQEFDIICQ EKKLLQEELI QLKAMIRENG ASNNKQQTWE NACSQAMQAQ FQLN
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00049PBMTransfer from AT2G36610Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635691.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565691e-72DQ056569.1 Arabidopsis thaliana homeobox-leucine zipper family protein (At2g36610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635691.11e-176PREDICTED: homeobox-leucine zipper protein ATHB-22 isoform X1
SwissprotQ4PSR78e-74ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBLA0A3P6BTB01e-129A0A3P6BTB0_BRAOL; Uncharacterized protein
STRINGBo4g034490.11e-129(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.15e-66homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]