PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013635548.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 251aa MW: 28671.4 Da PI: 8.1626 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.8 | 8.5e-05 | 110 | 131 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C Cgk F ++++L H+r+H XP_013635548.1 110 RCCLCGKEFQTRHSLFGHMRRH 131 7********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 1.1 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 7.17E-6 | 42 | 64 | No hit | No description |
PROSITE profile | PS50157 | 9.889 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 0.0033 | 44 | 66 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.17E-6 | 104 | 131 | No hit | No description |
SMART | SM00355 | 0.031 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.159 | 109 | 131 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13894 | 0.0013 | 110 | 131 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 111 | 131 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MKRTRDDDNP SHFLHEYDED DEEDSSSGGF QPPSPPPQQV KHFCVICSKQ FSSGKAYGGH 60 VRIHSSEYSN KGKTKKMRMK KKRKIGLVNK EKEKEKEIDL IRADFEGKIR CCLCGKEFQT 120 RHSLFGHMRR HPERSWKGVR PPPPEKLNLS FLDDDADEND GDDVMSRSIM MSGVTRDVHD 180 AACCLMMLKS GKRKANSEVR SFSYCNDEMD VKGSTVDMKI KVEIEVNANN PQTDPKKKSL 240 GFDLNQPCHE S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013635548.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013635548.1 | 0.0 | PREDICTED: uncharacterized protein LOC106341294 | ||||
TrEMBL | A0A0D3BUK1 | 0.0 | A0A0D3BUK1_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g076920.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11455 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26940.1 | 1e-70 | C2H2 family protein |