PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635528.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 300aa    MW: 34385.2 Da    PI: 4.9388
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635528.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.53e-10177260281
                     EEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T.T-EEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke.gDfvv 81 
                     +k+lt+sdv++++ l+l+++ a++         +g ke++   t++ ++g++ e+ +  rkk++++ lt GW  Fv++ gLke  Dfv+
  XP_013635528.1 177 QKQLTTSDVTQNK-LSLSNSQARKKfqqllgdeSGRKESG--FTVYGPDGKVHEIWV--RKKKRSFDLTIGWWTFVEQYGLKEcCDFVT 260
                     79*********98.**********9*****9885566665..8888***********..**********************96246555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-9174267IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-9176273IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-9176265No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MASQTQDEEE VHHRKKEDAL DEEPELIDLN IEAKHEDDDN IVASESSETR EAKRQKVEQE  60
VKDANQEDDD EKIVASESSA TSQQEVKDSI TMMVPSTTTP RSLTQEEAKA KEDDARASRM  120
LASTSNDLVR PGLEINDYDV EDSEQTLTFL TRWKAPETPP EKIIHRSLVE QCSRPIQKQL  180
TTSDVTQNKL SLSNSQARKK FQQLLGDESG RKESGFTVYG PDGKVHEIWV RKKKRSFDLT  240
IGWWTFVEQY GLKECCDFVT VWMFRHSVTR RICLAVDVTR FAFRKQVSKR ISQAAFHDSA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635528.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635528.10.0PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A078K2B50.0A0A078K2B5_BRANA; BnaCnng75730D protein
TrEMBLA0A3P6CBZ70.0A0A3P6CBZ7_BRAOL; Uncharacterized protein
STRINGBra005015.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1630655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.19e-31B3 family protein