PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635335.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 298aa    MW: 33243 Da    PI: 8.365
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000433759123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C+ C + F++   L  H+++H
  XP_013635335.1 37 YACSFCRREFRSAQALGGHMNVH 59
                    89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.45E-63463No hitNo description
PROSITE profilePS5015711.1773764IPR007087Zinc finger, C2H2
PfamPF139122.3E-53760IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDKPGGLFIP KKKQSSWEEL AFAEDDAAGS LWPPRSYACS FCRREFRSAQ ALGGHMNVHR  60
RDRARLKQSD DQYLFSKSSS SPEHPSHKNS ETSCYTLFFN SSPNRLKSQH SRVIDLPSSP  120
SSLLYLPPSR GFSGLPQKQD TSSSSPNAIE PSNNSENILS SSPRSCPNTF VKKKSCDLYE  180
TPVIEGSKKR KIERDVPKNG DTENVNLGDT TDLSLRMNLV IHEGYPITAQ VSDEEVGRGD  240
SLKKRRMRES SSEPSIFVSS FSCKSAIITR NEEIKPKGGH FEDLDLELRL GADPPKEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-133259229superman protein
2l1o_A9e-133259229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171190KKKSCDLYETPVIEGSKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, axillary buds and flowers. {ECO:0000269|PubMed:12154136}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635335.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893070.0AC189307.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033O04, complete sequence.
GenBankAC1895100.0AC189510.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635335.10.0PREDICTED: uncharacterized protein LOC106341064
SwissprotO809421e-135ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A0D3C4V10.0A0A0D3C4V1_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CRR00.0A0A3P6CRR0_BRAOL; Uncharacterized protein
STRINGBo4g187170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-115zinc-finger protein 10