PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635263.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20038.6 Da    PI: 7.625
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635263.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.11.3e-19251150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k +e++ nr +tfskR++gi+KK +EL  LC++e+a + fs+tgk ++++
  XP_013635263.1  2 KEVEDYENRMTTFSKRKTGIFKKMSELVALCGVEAAFVAFSETGKSHTFA 51
                    5789*********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001201.95E-21153No hitNo description
SuperFamilySSF554557.46E-19163IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.904154IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-14153IPR002100Transcription factor, MADS-box
PfamPF003192.6E-20450IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-71631IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-73152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MKEVEDYENR MTTFSKRKTG IFKKMSELVA LCGVEAAFVA FSETGKSHTF AHPSMEDAVG  60
RLKSPLIDES PRKDDTNTPS LVGAYKRQKN EELKKLYADF AEELELEEEK EKKLKKSKSD  120
KRFDKKWWNA EGLSVEERKQ MHQSFVELNV SLCGKVSQQF RKDGDGSSAD LAGHGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635263.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635263.11e-128PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A078JXZ91e-126A0A078JXZ9_BRANA; BnaCnng72100D protein
TrEMBLA0A0D3AFP21e-126A0A0D3AFP2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6G7J21e-126A0A3P6G7J2_BRAOL; Uncharacterized protein
STRINGBo1g152200.11e-127(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-41AGAMOUS-like 57