PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013635201.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 176aa    MW: 20430.1 Da    PI: 8.323
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013635201.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-3294152159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vk++ +prsYYrCt+++C+vkk+v+r a+dpk++++tYeg Hnh+
  XP_013635201.1  94 LDDGYRWRKYGQKSVKNNGHPRSYYRCTYHTCNVKKQVQRLAKDPKIIVTTYEGIHNHP 152
                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-3281152IPR003657WRKY domain
SuperFamilySSF1182902.48E-2886153IPR003657WRKY domain
PROSITE profilePS5081129.40289154IPR003657WRKY domain
SMARTSM007748.0E-3794153IPR003657WRKY domain
PfamPF031063.9E-2695152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MERQDIIPPT LSLDVENNDK TFSSFVDETL MMMPSLALPG EVEPSSSSWC PTSFHMPTQP  60
PENDQIGDQG KKKDKRSRKV PRIEFHTRSD DDVLDDGYRW RKYGQKSVKN NGHPRSYYRC  120
TYHTCNVKKQ VQRLAKDPKI IVTTYEGIHN HPCEKLMETL NPLLRQLQFL SSFSNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-26871511074Probable WRKY transcription factor 4
2lex_A3e-26871511074Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013635201.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300420.0KF430042.1 Brassica rapa WRKY transcription factor 24 (WRKY24) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635201.11e-131PREDICTED: probable WRKY transcription factor 24
RefseqXP_013743457.11e-131probable WRKY transcription factor 24
RefseqXP_013746877.11e-131probable WRKY transcription factor 24
SwissprotQ9FFS34e-98WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A078I3P21e-130A0A078I3P2_BRANA; BnaCnng11190D protein
TrEMBLA0A0D3C0H41e-130A0A0D3C0H4_BRAOL; Uncharacterized protein
TrEMBLA0A3P6C9J51e-130A0A3P6C9J5_BRAOL; Uncharacterized protein
STRINGBo4g142200.11e-131(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50928154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.18e-81WRKY DNA-binding protein 24