PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013634737.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 266aa MW: 28830.6 Da PI: 8.79

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013634737.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.3	3e-39	53	151	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdP+yG++g i++lq+++++l++el XP_013634737.1 53 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELT 147 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ XP_013634737.1 148 AVRT 151 9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.142	52	153	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.3E-40	53	150	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MSRDSREGFG DYYKIVKKVK KDPTFEKTMD HAVMGIRRHV AVPPGTTLNT VTPCAACKLL 60 RRRCAEECPF SPYFSPHEPH KFAAVHKVFG ASNVSKMLLE VGESQRGDAA NSLVYEANLR 120 LRDPIYGCMG AISALQHHIQ SLQSELTAVR TDILRHKYRE AATITSLQNN NNNFNDTTTT 180 SVSDHAALAA AILLPPPLPP PHPPRPPRLL SSQAAPPVSL PSPSMMVSSS SSSNSSAANS 240 MYNSPPSSAA GCSNSLSSDN NVHYFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	46	164	4	122	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	46	164	4	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in shoots and roots and at low levels in flowers, but not in leaves or inflorescence stems. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013634737.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634737.1	0.0	PREDICTED: LOB domain-containing protein 13-like isoform X1
Refseq	XP_013659707.1	0.0	LOB domain-containing protein 13-like isoform X1
Swissprot	Q9AT61	1e-128	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0D3C321	0.0	A0A0D3C321_BRAOL; Uncharacterized protein
STRING	Bo4g172950.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-101	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]