PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013634611.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C3H

Protein Properties

Length: 270aa MW: 29395.6 Da PI: 8.4163

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013634611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.2	1e-06	73	98	1	26
--S---SGGGGTS--TTTT.T-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGd.rCkFaHg 26 +kt+lC++f++ G C+y + +C+FaH+ XP_013634611.1 73 FKTKLCCNFRA-GSCPYVAsTCHFAHS 98 69*******.*9637***7 PP
2	zf-CCCH	17.5	7.5e-06	114	139	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f + C+yG++C+F H+ XP_013634611.1 114 YKGRHCKKFNSGEGCPYGESCTFLHD 139 7778899999966************7 PP
3	zf-CCCH	38.9	1.4e-12	168	193	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C+ + +G+C++G +C+FaHg XP_013634611.1 168 WKTRMCNKWEMSGYCPFGTNCRFAHG 193 8************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	2.5E-13	70	105	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.14E-5	71	104	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.019	72	99	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.986	72	100	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.8E-4	73	98	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.031	113	140	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.63E-7	113	140	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.859	113	141	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.9E-9	114	140	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-16	165	197	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.45E-10	166	198	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.9E-7	167	194	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.432	167	195	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-8	168	193	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MSHRRDSTTD AVHVIPTNDP PPENPFPSPV WAATEDDYSR VSAANNDDTE SPWKKARGSP 60 SSSSSSEIGK AFFKTKLCCN FRAGSCPYVA STCHFAHSAE ELRRPTAGES VRPYKGRHCK 120 KFNSGEGCPY GESCTFLHDE ASRNREGFAV SLGHRGGGNV VAAASPNWKT RMCNKWEMSG 180 YCPFGTNCRF AHGASELHRF GGGLVEEEEG KIGTSSTLDT KKTGQASLAS PGVRTSNAVT 240 QKPNGVRVVR KWKGPDKISR VYGDWIDDIE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013634611.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU953556	0.0	EU953556.1 Zea mays clone 1434304 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634611.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 28-like
Swissprot	Q5PP65	1e-99	C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
TrEMBL	A0A0D3BRW7	0.0	A0A0D3BRW7_BRAOL; Uncharacterized protein
STRING	Bo4g038870.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4003	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35430.1	3e-91	C3H family protein