PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013634581.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 252aa MW: 29049.1 Da PI: 9.2526 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.2 | 6.7e-49 | 14 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yL +kv+g l++ vi+e+di+k+ePwdLp ++e yfFs r+ ky++g+r+nr+t sgyWkatg d+++ + XP_013634581.1 14 LPPGFRFHPTDEELVVHYLSRKVSGLLLPA-YVIPEIDICKAEPWDLPGD---CNSERYFFSMREAKYPNGNRSNRSTGSGYWKATGIDRQIGK- 103 79***************************9.89***************44...35699**********************************77. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kktLvfykg+ p+g++t+Wv+heyrl XP_013634581.1 104 --KVLGMKKTLVFYKGKPPNGTRTSWVLHEYRL 134 ..89***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-56 | 10 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.804 | 14 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-26 | 15 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MEKPCSIKNR ELRLPPGFRF HPTDEELVVH YLSRKVSGLL LPAYVIPEID ICKAEPWDLP 60 GDCNSERYFF SMREAKYPNG NRSNRSTGSG YWKATGIDRQ IGKKVLGMKK TLVFYKGKPP 120 NGTRTSWVLH EYRLVDSQHE SYGENMNWVL CRVFLKKRSN NNKKKKKEDE REKKEEIESD 180 DNKSTCPIFY DFMRNDVKKG KCCTLNLTRC SSPSSASSSV CSSALIQTCL NSDSDNHHQE 240 TSCRGNKFHL FL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-50 | 11 | 157 | 12 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 173 | KKKKKEDEREKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013634581.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM975668 | 0.0 | KM975668.1 Brassica napus NAC transcription factor 41.1 (NAC41.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013634581.1 | 0.0 | PREDICTED: NAC domain-containing protein 41-like | ||||
Swissprot | O22798 | 1e-107 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | A0A0D3BSF0 | 0.0 | A0A0D3BSF0_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g043670.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1806 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 1e-101 | NAC domain containing protein 41 |
Publications ? help Back to Top | |||
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