PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634549.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 343aa    MW: 38742.5 Da    PI: 6.0928
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.51.1e-48141401128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     l pGfrF+Ptd el+++yL++k+eg+++++  vi+ev+iyk+ePwdLp ++  ++e+ew++F+ r +ky++g++++rat+ gyWkatgk+++v+s
  XP_013634549.1  14 LFPGFRFSPTDVELISYYLRRKIEGDENSV-AVIAEVEIYKFEPWDLPgESKLKSENEWFYFCARGRKYPHGSQSRRATELGYWKATGKERSVKS 107
                     579************************999.89***************543334678************************************** PP

             NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vg+k+tLvf+ grap+ge+t+W+mhey +
  XP_013634549.1 108 -GNQIVGTKRTLVFHIGRAPRGERTEWIMHEYCI 140
                     .999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-546155IPR003441NAC domain
PROSITE profilePS5100552.85114156IPR003441NAC domain
PfamPF023652.1E-2416139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIEGDE NSVAVIAEVE IYKFEPWDLP  60
GESKLKSENE WFYFCARGRK YPHGSQSRRA TELGYWKATG KERSVKSGNQ IVGTKRTLVF  120
HIGRAPRGER TEWIMHEYCI HGASQDALVV CRLRKNADFR ASSSQRQMED GLVQDDDYVG  180
QTGGSEREKK SYLVDEPEQL QISNGDIAES SNVVEDDTND DCYAEILNDD IIKLDEEAVK  240
ANQAFRPNYP TQQKAIFTEA SSSKQMSECG MKKESKQTMN SYALFRIKNG STASSSGCKI  300
PNPLTHIKKD DSQRVTKNVL ATTVFLTILM SVLFTVLTAR DRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-431316619174NAC domain-containing protein 19
3swm_B3e-431316619174NAC domain-containing protein 19
3swm_C3e-431316619174NAC domain-containing protein 19
3swm_D3e-431316619174NAC domain-containing protein 19
3swp_A3e-431316619174NAC domain-containing protein 19
3swp_B3e-431316619174NAC domain-containing protein 19
3swp_C3e-431316619174NAC domain-containing protein 19
3swp_D3e-431316619174NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates in imbibed seeds (PubMed:19704545). Detected in early stages of seed development, especially in the basal tip of immature embryo. Particularly expressed in vascular tissues of inflorescence stems, roots, leaves and petioles (PubMed:17410378). {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:19704545}.
UniprotTISSUE SPECIFICITY: Expressed in seeds, leaves, roots and inflorescence (PubMed:17410378). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634549.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634549.10.0PREDICTED: NAC domain-containing protein 40 isoform X2
RefseqXP_022556689.10.0NAC domain-containing protein 40-like isoform X2
SwissprotQ9XIN70.0NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A0D3BUG40.0A0A0D3BUG4_BRAOL; Uncharacterized protein
STRINGBo4g075560.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.10.0NTM1-like 8
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]