PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634338.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 321aa    MW: 36556.6 Da    PI: 8.497
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-11170220154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r++h  +Er+RR+++N  ++ Lr+++P++   +  + + a+i+  A++++k L
  XP_013634338.1 170 QRMTHITVERNRRRQMNVHLNSLRSIIPSS---YFLRGDQASIVGGAIDFVKIL 220
                     79***************************9...99999**********999866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.62E-9168225No hitNo description
PROSITE profilePS5088813.402169220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-14169232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-11170233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-6175226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MNNQISIVSL FSLTHLVGTS FFLQLLDQKV NVRRSLQVQA SAEDHSFPLE EDQSSNLTLQ  60
GTRLPFQQIL QDPSSVLSFK DPHILGNYLP HEVPELHSPI HSETNHYYQN SLLEGTNEDI  120
SSQELQLNPV DNAFSRGKLR NNNLAASVSR EKRKRRRSKP MKNREEIESQ RMTHITVERN  180
RRRQMNVHLN SLRSIIPSSY FLRGDQASIV GGAIDFVKIL EQHLQSLEAQ KITQQTSKLI  240
IDATVMERHV NLKMQCCQRR QGQLVRSIFL LEKLGLTVLH LNVTSPCNAS IAYSFNLKME  300
DACNLGSADE ITAAVRQIFD C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156KRKRRR
2152156RKRRR
3152157RKRRRS
4152159RKRRRSKP
5170181RMTHITVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634338.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634338.10.0PREDICTED: transcription factor bHLH70-like isoform X1
SwissprotO810371e-135BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A3P6D1P50.0A0A3P6D1P5_BRAOL; Uncharacterized protein (Fragment)
STRINGBo4g197360.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-136bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]