PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013634279.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 292aa    MW: 34825 Da    PI: 7.025
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013634279.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.17.8e-2639121186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ +e+++Li++r e+++++ ++k++k lWe+vs+kmr + f rsp+qCk+kw+nl +r+k +++++++    +++++p++d+++
  XP_013634279.1  39 QWSVEETKELIAIRGELDQTFMETKRNKLLWEDVSNKMRNKSFLRSPEQCKCKWKNLVTRFKGCETMDEEI---AKQQFPFYDDMH 121
                     7********************************************************************97...45579*****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00123698IPR001005SANT/Myb domain
CDDcd122035.64E-2238103No hitNo description
PfamPF138371.0E-2039121No hitNo description
PROSITE profilePS500907.6544096IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDQHQLHQLH YLNKHHHQLH PQSQTPELAS PATGDRFPQW SVEETKELIA IRGELDQTFM  60
ETKRNKLLWE DVSNKMRNKS FLRSPEQCKC KWKNLVTRFK GCETMDEEIA KQQFPFYDDM  120
HIIFASRMQR MIWAESEGGG GTSGATRKRS QSEQFSSDEE EENVNEELVD ISNEPKTQNP  180
KKNIAKKRKG GISNSSGGAN NSVREVLDEF MRHQMRMENE WRERWEAREK ERAEKEEEWR  240
RKMEELEKDR MAMERMWRDR EEQRRSREDL RAEKRDSLIN ALLAKLTRDG SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A5e-1336117384DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179188PKKNIAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013634279.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634279.10.0PREDICTED: trihelix transcription factor GT-3b-like
RefseqXP_013705349.10.0trihelix transcription factor GT-3b
SwissprotO804501e-119TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A0D3BQZ20.0A0A0D3BQZ2_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BT130.0A0A3P6BT13_BRAOL; Uncharacterized protein
STRINGBo4g029680.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22152870
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.13e-96Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]