PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633859.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 36120.1 Da PI: 7.024 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 137 | 183 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++N+++ L llP + kK +Ka++Le A++++k+Lq XP_013633859.1 137 EHVLAERKRRQKLNERLIALSALLPGL-----KKADKASVLEDAIKHLKQLQ 183 5889***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.06E-15 | 133 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.707 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-10 | 137 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.5E-15 | 137 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.39E-12 | 138 | 187 | No hit | No description |
SMART | SM00353 | 4.2E-14 | 139 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MEDSSFTDLM IDTDEYLVDD WEQDFPVIPA ETTDYQSTKP GSGSEYGSGL SLIPENRPTK 60 QMKVNSTSSS SPSSSSSSCG SLTAAQVISF GSQDPKMNVV EASFNFSSQA NMEPNVRSKR 120 KECGNNGGKR EPHLLKEHVL AERKRRQKLN ERLIALSALL PGLKKADKAS VLEDAIKHLK 180 QLQERVKKLE EERVGTKKMD QSVILVKRSQ VYMDDDSSSY SSTCSAASPP SSSLDEVSIL 240 KQTMPMIEAR VSDRDLLIRI HCEKNKGCLV KILNSLEKFH LEVVNSFTLP FGNSTLVIII 300 LTKMDNKFSR PIEDVVKNIR LALAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 146 | ERKRRQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates the expression of at least NAI2, PYK10 and PBP1. Required for and mediates the formation of endoplasmic reticulum bodies (ER bodies). Involved in the symbiotic interactions with the endophytes of the Sebacinaceae fungus family, such as Piriformospora indica and Sebacina. {ECO:0000269|PubMed:12581307, ECO:0000269|PubMed:15155889, ECO:0000269|PubMed:15919674, ECO:0000269|PubMed:18248598, ECO:0000269|PubMed:18467340, ECO:0000269|PubMed:18780803}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633859.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633859.1 | 0.0 | PREDICTED: transcription factor NAI1 | ||||
Refseq | XP_013633861.1 | 0.0 | PREDICTED: transcription factor NAI1 | ||||
Refseq | XP_013690593.1 | 0.0 | transcription factor NAI1 | ||||
Swissprot | Q8S3F1 | 1e-156 | BH020_ARATH; Transcription factor NAI1 | ||||
TrEMBL | A0A0D3C1B3 | 0.0 | A0A0D3C1B3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6CIH0 | 0.0 | A0A3P6CIH0_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g151030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13607 | 17 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22770.1 | 1e-149 | bHLH family protein |
Publications ? help Back to Top | |||
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