PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633582.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 361aa    MW: 40377.7 Da    PI: 7.4929
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633582.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.57.4e-30153210260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +Dgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve+++ d++++ei+Y+g Hnh+k
  XP_013633582.1 153 NDGYGWRKYGQKQVKKSENPRSYFKCTYPNCVSKKIVETTS-DGQITEIIYKGGHNHPK 210
                     8***************************************9.***************85 PP
2WRKY103.21.5e-32297353359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+versaed+++v +tYeg+Hnh+
  XP_013633582.1 297 DGFRWRKYGQKVVKGNTNPRSYYKCTYQGCGVRKQVERSAEDERAVLTTYEGRHNHD 353
                     9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.9E-25140211IPR003657WRKY domain
SuperFamilySSF1182903.79E-23149211IPR003657WRKY domain
SMARTSM007743.4E-30152210IPR003657WRKY domain
PROSITE profilePS5081120.564153211IPR003657WRKY domain
PfamPF031062.3E-22153209IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-34280355IPR003657WRKY domain
SuperFamilySSF1182901.7E-28287355IPR003657WRKY domain
PROSITE profilePS5081134.165290355IPR003657WRKY domain
SMARTSM007749.8E-38295354IPR003657WRKY domain
PfamPF031061.4E-25297353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSSTSFTDLL ASSGVDPYEQ DEDFLGGFFP ETTGSGLPKF KTAQPSPLPI SQSSRSFAFS  60
ELLDSPLLLS SSHSLISPTT GAFPFQGFNG SDFPWQLPSQ TQTQTQTPNA ASALQEETYG  120
VQDLQKKQED PVPREFADRQ VKVPSYMVSR NSNDGYGWRK YGQKQVKKSE NPRSYFKCTY  180
PNCVSKKIVE TTSDGQITEI IYKGGHNHPK PEFTKRPSSS SANARRMLNP SSVVSEQSES  240
SSISFDYGEV DEEKEQPEIK RLKREGGDEG MSVEVSRGVK EPRVVVQTIS EIDVLIDGFR  300
WRKYGQKVVK GNTNPRSYYK CTYQGCGVRK QVERSAEDER AVLTTYEGRH NHDVPTAPRR  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-33286355877Probable WRKY transcription factor 4
2lex_A5e-33286355877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves, stems and seeds. {ECO:0000269|PubMed:18839316}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633582.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931460.0KM593146.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633582.10.0PREDICTED: probable WRKY transcription factor 25
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLA0A0D3C3140.0A0A0D3C314_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CJG30.0A0A3P6CJG3_BRAOL; Uncharacterized protein
STRINGBo4g171890.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.11e-178WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]