PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_013633155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 344aa MW: 39726.4 Da PI: 5.6092 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.8 | 3.8e-20 | 16 | 64 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++++s + +++ R+ +i+KKA+EL +LCd+e++vi ++++g++++++ XP_013633155.1 16 SSSSYSLAATSLKSRLLTIFKKAQELTTLCDIEACVIHYGPDGEMRTWP 64 799*********************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 8.928 | 25 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-13 | 27 | 99 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-10 | 29 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 344 aa Download sequence Send to blast |
MRPPRSSSCS KCSSASSSSY SLAATSLKSR LLTIFKKAQE LTTLCDIEAC VIHYGPDGEM 60 RTWPENRDIV RSLALRYIQL DQAKRRKKSV NLYEFLNKNK DKKTMLNKFK KRNVEELKYP 120 ISDHYSPDQI NQLIHSLELS YSTLQERRRF LAAKANLEDR QHSMNPSQFT PLPQELYVND 180 KNNTFQHLCV SDYSEVQESA LRYQLMPYGG YDQNMCMGNI NNVQHPWVSN AQPPELQEPN 240 QLMQHEPYGF DQNMCMGDTT NSCNVVDPCL PNMLPDDFCF DFQDPYGGNM VGNPSFSQDF 300 FPDMTSSYVY EADYFRNLLY HLSSSNIPND NSEISSNLPD DHRE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_013633155.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633155.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q9FLL0 | 3e-59 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | A0A0D3C017 | 0.0 | A0A0D3C017_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g139640.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G40120.1 | 2e-59 | AGAMOUS-like 76 |
Publications ? help Back to Top | |||
---|---|---|---|
|