PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G40120.1 | ||||||||
Common Name | AGL76 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 385aa MW: 44447.3 Da PI: 9.3586 | ||||||||
Description | AGAMOUS-like 76 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.6 | 2.1e-25 | 9 | 58 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s +++++s+R+++i+KKA+EL++LCd+e++vi+++++g+l+++++ AT5G40120.1 9 SSSSYSLASTSLSNRLETIFKKASELCTLCDIEACVIYYGPDGELKTWPK 58 6899********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.9E-6 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-14 | 17 | 56 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 9.699 | 18 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.19E-15 | 18 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 4.00E-17 | 23 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MTMRSLPFSS SSYSLASTSL SNRLETIFKK ASELCTLCDI EACVIYYGPD GELKTWPKEK 60 EKVRDIALRY SQLNEALRSK KSVNLHGFLN KKKKKKKKGL KNPNNKRKTC LKKNVNVLKY 120 PLADHYPPDQ VSQLTQSLKL HVSKFQERLR FLESQKQTKP DHQSLTPSSL NHQTQSLNPR 180 QFSLFMYNHG DNTLSQISVS ASNFNQNYFS ALLEQSELKN QLMKQDGYDQ NQNMRMGDIT 240 NNNFQLPYFS KKEAVQESVN YFGMNQLMLK ELYGCDQNMC MGNINSNSFQ HPCVSKAQHY 300 SAVEGSVNNQ RQSELMQQEL CGYEQNMCFT NNNFQVSNKE AVQESVTNFG LMQHELYGCD 360 QNMSMGNIIN NSFQQRLKHR TRICE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 97 | KKKKKKK |
2 | 91 | 107 | KKKKKKKGLKNPNNKRK |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18421946 | 0.0 | ||||
Genevisible | 249419_s_at | 1e-88 | ||||
Expression Atlas | AT5G40120 | - | ||||
AtGenExpress | AT5G40120 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G40120.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G49420, AT1G46408 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G40120 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB010699 | 0.0 | AB010699.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN9. | |||
GenBank | AY141222 | 0.0 | AY141222.1 Arabidopsis thaliana MADS-box protein AGL76 mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_198828.1 | 0.0 | AGAMOUS-like 76 | ||||
Swissprot | Q9FLL0 | 1e-172 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | Q9FL19 | 0.0 | Q9FL19_ARATH; AGAMOUS-like 76 | ||||
STRING | AT5G40120.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 | Representative plant | OGRP6766 | 2 | 18 |
Link Out ? help Back to Top | |
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Phytozome | AT5G40120.1 |
Entrez Gene | 834009 |
iHOP | AT5G40120 |
wikigenes | AT5G40120 |
Publications ? help Back to Top | |||
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