PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013633153.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 305aa MW: 35128.6 Da PI: 6.1582 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.8 | 1.6e-19 | 9 | 57 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++++s + +++ R+ +i+KKA+EL +LCd+ ++vi ++++g+l++++ XP_013633153.1 9 SSSSYSLAATSLNSRLLTIFKKAQELTTLCDIGACVIHYGPDGELKTWP 57 799*********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 8.507 | 18 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-13 | 21 | 92 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-9 | 22 | 56 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MRPPRPSSSS SSYSLAATSL NSRLLTIFKK AQELTTLCDI GACVIHYGPD GELKTWPENR 60 DIVRDLALRY IQLDQAKRRK KSVNLHEFLN KNKDKKTMLN KFKKRNVEEL KYPISDHYSP 120 DQISQLIQSL ELSYSKLQER RRFLAEKANM EDRQPSLNPS HFTKYPEESC VYDQNNFQHL 180 CVSDYSALQE PGLHNYQLMP YVGYYQNMCM GNNFQVPCVS DYSLFPPELQ ETVSNYGMNQ 240 LMQNMCMGDT TNSCNVLHPC LSDDLCFDFQ DPYGGNPSFS QDFPDISSSY VYENTLLQGC 300 TQPSL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013633153.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013633153.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL93 | ||||
Swissprot | Q9FLL0 | 3e-61 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | A0A078HIZ9 | 0.0 | A0A078HIZ9_BRANA; BnaC04g32160D protein | ||||
TrEMBL | A0A0D3C015 | 0.0 | A0A0D3C015_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g139620.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G40120.1 | 1e-60 | AGAMOUS-like 76 |
Publications ? help Back to Top | |||
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