PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633147.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20554.3 Da    PI: 10.0883
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633147.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.63.4e-181866250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    +++ +s + +++  R+ +i+KKA+EL +L d+e++vi ++++g+l++++
  XP_013633147.1 18 SSSTYSLAPTSLNSRLLTIFKKAQELTTLSDIEACVIHYGPDGELRTWP 66
                    6788999*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554557.19E-1330101IPR002100Transcription factor, MADS-box
PfamPF003191.1E-83265IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MRSPRPSSCS ESSSSSSSSS TYSLAPTSLN SRLLTIFKKA QELTTLSDIE ACVIHYGPDG  60
ELRTWPENRD IVRDLALRYI QLDEAKRRKK NVNLYEFLNK NKDKKKMANN FKKKAKKNVE  120
ELKYPISDHY SPDEINQLIH SLELSYSTLQ ERRRFLAAKK HNESLNPSQF TPYHKSLG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633147.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633147.11e-128PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ9FIX03e-51AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBLA0A078JD851e-124A0A078JD85_BRANA; BnaCnng47860D protein
TrEMBLA0A0D3BZX91e-124A0A0D3BZX9_BRAOL; Uncharacterized protein
STRINGBo4g139260.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38740.12e-46AGAMOUS-like 77
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]