PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633109.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 311aa    MW: 35394.9 Da    PI: 8.9281
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633109.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573864.8e-2787175497
          DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +rl+se+DeivlLqG+id    +gk+p ++   fy+ +k+s sf+v+ +q+++Kir+++k +++++ +   +++ s+ ++h+qk+f+lsk iWg
  XP_013633109.1  87 KRLFSEKDEIVLLQGIIDS---KGKNPLKNKRSFYQSMKGSFSFDVTLRQFSDKIRHMQKLYTRNEMR--GEQQASVLNPHQQKCFQLSKAIWG 175
                     79****************8...9*******************************************99..99999******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.8E-2387175IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MANNLKHPFE DPPSSPSSSA SEDQNLQTIF PSEEDEPEDP PPRSGSKKDV CGSSESQLTG  60
KKRLSSNASS NVAKRICTRG GKMGTDKRLF SEKDEIVLLQ GIIDSKGKNP LKNKRSFYQS  120
MKGSFSFDVT LRQFSDKIRH MQKLYTRNEM RGEQQASVLN PHQQKCFQLS KAIWGADGIA  180
FESAISSNSK SEESERRRVT KKRDFVTSRK GKNVQEAIKR GDMEKSPYVE KESTDWDDES  240
SFFLGMDFLK EKWTKVPAET KKETQERMKK LHANELECQK FEEMLKVMKD KCAHDKVELL  300
NEVTSLIMAA D
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633109.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633109.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A0D3BZD60.0A0A0D3BZD6_BRAOL; Uncharacterized protein
STRINGBo4g136340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.13e-37DNA-binding storekeeper protein-related transcriptional regulator