PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633106.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 306aa    MW: 35016.6 Da    PI: 8.0804
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633106.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57385.47.4e-2789176497
          DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +rl+se+DeivlLqG+id    +g +p +d   +ye +k+s sf+++ +q+ eK r +++K+++k+ +   g++ s s++h+qk+f+lsk iWg
  XP_013633106.1  89 RRLFSEKDEIVLLQGVIDS---KGENPLEDSRSLYESMKGSFSFDITLRQFREKFRTMRRKYTTKEMR---GEQASASNPHQQKCFQLSKAIWG 176
                     79****************8...999*****************************************99...**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.3E-2389176IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MANILKHPLE DPPSLSSSAA GELLFISSQE EDEEDQHTIF SSDEGEPEDP PPRSSGEAQL  60
LGRRISTNVR SKRARKMYTQ GEKMGTDHRR LFSEKDEIVL LQGVIDSKGE NPLEDSRSLY  120
ESMKGSFSFD ITLRQFREKF RTMRRKYTTK EMRGEQASAS NPHQQKCFQL SKAIWGVEGI  180
AFESANGKLK KSEGRLSKKR DLVSSLKGKK AQEASKRGDM KKSPLVEKES DWDESSFFLG  240
MDFLKEKWTK VRTETKKETQ EKMKKLHANE LECKKIEETL KAVKDQCEHD KVELLNEVTS  300
LIMSVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633106.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633106.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A3P6CNB01e-160A0A3P6CNB0_BRACM; Uncharacterized protein
TrEMBLM4EH401e-160M4EH40_BRARP; Uncharacterized protein
STRINGBra028105.1-P1e-160(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-34DNA-binding storekeeper protein-related transcriptional regulator