PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633105.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 312aa    MW: 35366.7 Da    PI: 8.0734
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57389.15.5e-2894182497
          DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +r +se+DeivlLqG++d+   +gk+p +d   +ye +k+s sf+v+ +q+ eKir++ +K++ k++    +++ s+ ++h+qk+f+lsk iWg
  XP_013633105.1  94 NRRFSEKDEIVLLQGIVDY---KGKNPLEDKRSLYESMKGSFSFDVTLDQFREKIRHMNNKYTAKERS--GEQQASILNPHQQKCFQLSKAIWG 182
                     688****************...9******************************************999..99999******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-2394182IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MTNNLKHPYE DPPSSPSSSA GEREIEFVSS QEDEDEEGRQ HTIFSSDEDE PEDPPPRSSG  60
EAQLSGRKRL SEGISSSNVS SKRAKKGEKM GTKNRRFSEK DEIVLLQGIV DYKGKNPLED  120
KRSLYESMKG SFSFDVTLDQ FREKIRHMNN KYTAKERSGE QQASILNPHQ QKCFQLSKAI  180
WGADGIAFQS ANGKLKKSEG RVSKKRDLVS SLMGKKAQEG SKRGDTKNAP LVEKESDWDE  240
SSFFLGMDFL KEKWTKVPAE TKKETQEKMK KLHANELECQ KFEKMLKTMK DKCAHDKVEL  300
LNEVTSLIMA AD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633105.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633105.10.0PREDICTED: mediator-associated protein 1-like
TrEMBLA0A397ZSQ50.0A0A397ZSQ5_BRACM; Uncharacterized protein
STRINGBra028105.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.13e-41DNA-binding storekeeper protein-related transcriptional regulator