PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013633036.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 402aa    MW: 45101.3 Da    PI: 8.9801
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013633036.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind23.21.8e-072443032483
       GAGA_bind  24 lglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnklla 83 
                       +q m si+e+d +++e++la++ek+ av+e+d a +++d a++e++ a+ e+d ++ +
  XP_013633036.1 244 THFQTMCSIKEKDLAVKEKDLAVKEKDLAVKEKDLAVKEKDLAVKEKDLAVKEKDLAVKE 303
                     46899********************************99*******99999999987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.57454125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.2E-459124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDSSNPFSQT SNFVDLLNSQ QNTDFPETYP YASFSHGSSQ LPRQTSSFCE VSTIARRERK  60
KWTVTDDLVL ISAWLNTSKD PVVGNEQKAC AFWQRIAVYF AASPKVERGE TREAIQCKQR  120
WQKMNDLVCK FCGAYAAATR QKTSCQNEAD TVKLAHGIFY NDHKIKFNLH HAWEELRNDQ  180
KWCEIASSKI DGSGKKRKYD DGAQSESSQA TSNLGDQPTN RPPGVKAAKG ASGKRSIADH  240
QAVTHFQTMC SIKEKDLAVK EKDLAVKEKD LAVKEKDLAV KEKDLAVKEK DLAVKEKDLA  300
VKEKDLAVKE KDLAVKEKDL AVKEKDLAVK EKDLAVKEKD LAVKEKDLAV KEKDLAVKEK  360
DLAVKERVSK MSLLDSLISK KDSLSEAEKA LKQKLLTEML SN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013633036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013633036.10.0PREDICTED: glutathione S-transferase T3-like
TrEMBLA0A0D3BY550.0A0A0D3BY55_BRAOL; Uncharacterized protein
STRINGBo4g120150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.21e-09basic pentacysteine 6