PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013632219.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 434aa    MW: 47170.3 Da    PI: 9.1821
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013632219.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.4e-08113133526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+f+ + G Ck Gd+C+F H+
  XP_013632219.1 113 VCKFWKA-GNCKKGDQCSFLHS 133
                     5******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.7E-6106133IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6108134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-7108133IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5113133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295113135IPR000571Zinc finger, CCCH-type
SMARTSM003203.0E-4139178IPR001680WD40 repeat
SuperFamilySSF509785.8E-42141187IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.3E-41142429IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004003.7E-4145178IPR001680WD40 repeat
PROSITE profilePS5029418.985146350IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.951146187IPR001680WD40 repeat
PRINTSPR003201.1E-7165179IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780165179IPR019775WD40 repeat, conserved site
SMARTSM00320100218255IPR001680WD40 repeat
SuperFamilySSF509785.8E-42225430IPR017986WD40-repeat-containing domain
SMARTSM003206.5E-4263301IPR001680WD40 repeat
PfamPF004004.5E-5266301IPR001680WD40 repeat
PROSITE profilePS5008210.375285310IPR001680WD40 repeat
PROSITE patternPS006780288302IPR019775WD40 repeat, conserved site
PRINTSPR003201.1E-7288302IPR020472G-protein beta WD-40 repeat
SMARTSM003202.3E-5304341IPR001680WD40 repeat
PfamPF004000.003306340IPR001680WD40 repeat
PROSITE profilePS500829.172311340IPR001680WD40 repeat
PRINTSPR003201.1E-7328342IPR020472G-protein beta WD-40 repeat
SMARTSM003201.7391428IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MSYKAPRRYS NGRNFGVERQ QDFVADIVPR RPYENKGSNK WSRNLVWTAS GANKPRKNGN  60
TYGSTKPQVS GAGALVSNQQ RKDAAYVQRS SSVSDTRGWG SSDRGSPKSK ECVCKFWKAG  120
NCKKGDQCSF LHSLTCLPGL VMVAALEGHK KDLKGIALPQ GSDKLFSAGS DGTLRIWDCH  180
TGQRVHTINL QAEAGSLICE GPWVFLGLPN AVKAFNVQTS KDLHLNGVVG QVRTMTVGNG  240
MLFAGTSSGS ISVWKATDSE SDPFTYLTSL KGHHSGEVTC FIVGGHRLYS GSVDRTIKVW  300
DLNTLECTMT LRHHTDTVTS LLCWDQYLIS SSLDGTIKVW ACSENGSLTV TNTRRQEQSV  360
HTLCGMSDAE GKPIVFCSYE NGTVSICDLP SFEVRGKMFS TNTVGTITIG PEGLLFTGDK  420
NGKLRVWSLA GTKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-1814642911323Tako8
6g6n_A1e-1814642911323Tako8
6g6n_B1e-1814642911323Tako8
6g6n_C1e-1814642911323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013632219.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632219.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A0D3C0550.0A0A0D3C055_BRAOL; Uncharacterized protein
STRINGBo4g140020.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein