PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631913.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 368aa    MW: 40404.1 Da    PI: 8.3303
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631913.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.8e-06120143123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C  Cg++F+   +L++Hi + H
  XP_013631913.1 120 FSCATCGEVFPKTNLLEHHIAVkH 143
                     89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
PROSITE profilePS501579.265120148IPR007087Zinc finger, C2H2
PROSITE patternPS000280122143IPR007087Zinc finger, C2H2
SuperFamilySSF563996.52E-12145367No hitNo description
Gene3DG3DSA:3.90.228.104.4E-5297367IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAAQKLGSLL RQHFFSLFFL FVGCFLFPKG SDCKHKKRKK KNLRTVSSGS GSGLSSPWSS  60
LKRFFLSTTR ISKPRSQTHP NGQLTTLTSA RSSHNSLVTL IQPDPETRNE SDSPLSDEIF  120
SCATCGEVFP KTNLLEHHIA VKHAVTELTD GESSTNIVKI IFKSGWPDLN NKAQEIHRIL  180
KIHNSPKILA RFEEYREFVK AKAARSCSGG GGRRRDDERC VADGNELLRF YCSTFMCDLG  240
QNGNSSLCGH QYCSVCGIIG AGFSPKLDGI ATLATGWRGH AAVPEEVEEE FGFMNVKRAM  300
LVCRVVAGRV GCDLIADDDV DKRDGGYDSL VGEGSGSKSG ALLRIDDEEL LVFNPRAVLP  360
CFVIVYTV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13539KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631913.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325770.0AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631913.10.0PREDICTED: uncharacterized protein LOC106337362
TrEMBLA0A0D3C2X50.0A0A0D3C2X5_BRAOL; Uncharacterized protein
STRINGBo4g169520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-147C2H2 family protein