PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631868.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 367aa    MW: 38943.6 Da    PI: 5.0401
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.89.8e-23260322163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     ++e+kr++rkq+NRe+ArrsR+RK+ae++eL+++++ L +eN +L+ e+++lk ++++l+se+
  XP_013631868.1 260 DREIKRQKRKQSNRESARRSRLRKQAECDELAQRAELLNEENASLRAEINRLKSQCDELTSEN 322
                     689**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.1E-83073IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.4E-40113229No hitNo description
Gene3DG3DSA:1.20.5.1708.6E-18252319No hitNo description
SMARTSM003388.7E-22260324IPR004827Basic-leucine zipper domain
PfamPF001703.2E-20261322IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.093262325IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.75E-11263319No hitNo description
CDDcd147023.19E-24265316No hitNo description
PROSITE patternPS000360267282IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MASNEMEKSS KEKEPTTPPP PPSSQEPSSA VSAGMATPDW SGFQHMIPPY GTPPHPYVAM  60
YPPGGMYGHP SMPPGSYPYS PYAMPSPNGM TEASGNTTGG TEGGDAKQSE VKEKLPIKRS  120
RGSLGSLNMI TGKNNEPGKN SGASANGAYS KSGESASDGS SEGSDANSQN GSGSGQEGKD  180
ENGDSANAPR NGTPVSQTVP IMPMPAAGPP TNLNIGMEYW GAPTSAAIPG MHGKASTPVP  240
GVAAPVSRDG SHSQPWLQDD REIKRQKRKQ SNRESARRSR LRKQAECDEL AQRAELLNEE  300
NASLRAEINR LKSQCDELTS ENTSLKDQLL SFPSLEGINM DKDDQEPEAY QTGVTERKVD  360
DTYKNST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276282RRSRLRK
2276283RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935771e-174AB493577.1 Arabidopsis thaliana At2g35530 mRNA for hypothetical protein, partial cds, clone: RAAt2g35530.
GenBankBT0220551e-174BT022055.1 Arabidopsis thaliana At2g35530 gene, complete cds.
GenBankBT0264411e-174BT026441.1 Arabidopsis thaliana At2g35530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631868.10.0PREDICTED: transcription factor HBP-1a-like isoform X2
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0D3BRT60.0A0A0D3BRT6_BRAOL; Uncharacterized protein
STRINGBo4g038560.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-168basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]