PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013631612.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 357aa MW: 39042.8 Da PI: 9.3384

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013631612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.6	6.7e-39	58	119	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss XP_013631612.1 58 PQEKINCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 119 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-25	57	107	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.4E-33	60	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.742	62	116	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	64	100	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MMNVKPMEQI MIPNNNTHQS NTPSIARPNT VLTSSGGVSA GVSNSNNTSV VVERKSRPQE 60 KINCPRCNST NTKFCYYNNY SLTQPRYFCK GCRRYWTEGG SLRNVPVGGS SRKNKRSSSS 120 NILQTTPSSL GLTTTLPDLN PPIIFSNQIP NKSKGASQDL NMLSFPVMQD QHVHMSKFLQ 180 MHKMEGNGNM THQQPSSSSS LYGSSSSPVS ALELLRTGVN VSSRSGINSF MPSGPMMDSS 240 NNVMYTSSGF PTMVDYKTSN LSFSTDHQGL GHNNNNNNNN NNNNNNNSSG DAHSDHHQGR 300 VLFPFGDQMK ELSSSITQEV DHDDNQQQKS HGNNNNSSPN NGYWSGMFST TGGGSSW

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MMNVKPMEQI MIPNNNTHQS NTPSIARPNT VLTSSGGVSA GVSNSNNTSV VVERKSRPQE  60
KINCPRCNST NTKFCYYNNY SLTQPRYFCK GCRRYWTEGG SLRNVPVGGS SRKNKRSSSS  120
NILQTTPSSL GLTTTLPDLN PPIIFSNQIP NKSKGASQDL NMLSFPVMQD QHVHMSKFLQ  180
MHKMEGNGNM THQQPSSSSS LYGSSSSPVS ALELLRTGVN VSSRSGINSF MPSGPMMDSS  240
NNVMYTSSGF PTMVDYKTSN LSFSTDHQGL GHNNNNNNNN NNNNNNNSSG DAHSDHHQGR  300
VLFPFGDQMK ELSSSITQEV DHDDNQQQKS HGNNNNSSPN NGYWSGMFST TGGGSSW

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular system of the mother plant, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013631612.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013631612.1	0.0	PREDICTED: dof zinc finger protein DOF2.5-like isoform X3
Swissprot	Q9ZPY0	1e-176	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	A0A0D3C6K8	0.0	A0A0D3C6K8_BRAOL; Uncharacterized protein
STRING	Bo4g197200.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	1e-141	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]