PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631243.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 332aa    MW: 35273.9 Da    PI: 10.0078
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP118.96.4e-3761153295
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 
                     + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++  +++   +  + ++g++   ++
  XP_013631243.1  61 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTL--KIPTTTNGDSDVGDN 153
                     57999***********************************************************88888444211111..111112221222221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.9E-3066144IPR005333Transcription factor, TCP
PROSITE profilePS5136927.32767121IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MATIKHHEDE RLRAVDLTSK PFEVNNAVSL EPKTEPSLES SSHQLQFPST SMSLAPPSRP  60
PLKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL LENAEPAIIA  120
ATGTGTVPAI AMSVNGTLKI PTTTNGDSDV GDNSAKKRRK RPSNSEYIDI NEAVTVSVSS  180
GLAPISSGLA PISSGLAPVS TVAQQTLPQG MVPMWAIPSN AVIPAVGAFF LVPHVAGPTN  240
QPQMLAFPAA PPSSYVAAVQ QASLMARPPF VSVPDVTRST PSVMAPSSSS GVTNGGSSSS  300
TTNMLRDFSL EIYEKQELHQ FMSTTTARSS NH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKRRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631243.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895801e-122AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631243.10.0PREDICTED: transcription factor TCP9
SwissprotO646471e-146TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A0D3BQ580.0A0A0D3BQ58_BRAOL; Uncharacterized protein
STRINGBo4g024860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-143TCP family protein