PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631232.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 454aa    MW: 49308.8 Da    PI: 6.9514
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631232.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.6e-17138187155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_013631232.1 138 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 187
                     78*******************......55************************997 PP
2AP239.81.1e-12230276151
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ 
  XP_013631232.1 230 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEVEAARAYDKAAI 276
                     89********.7******5553..2.26**********99*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-15138195IPR016177DNA-binding domain
PfamPF008475.1E-9138187IPR001471AP2/ERF domain
PROSITE profilePS5103217.82139195IPR001471AP2/ERF domain
SMARTSM003801.2E-32139201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-17139195IPR001471AP2/ERF domain
CDDcd000189.37E-11139194No hitNo description
SuperFamilySSF541716.28E-16230289IPR016177DNA-binding domain
CDDcd000187.40E-23230290No hitNo description
PfamPF008472.5E-8230276IPR001471AP2/ERF domain
SMARTSM003802.6E-29231294IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-15231289IPR001471AP2/ERF domain
PROSITE profilePS5103215.277231288IPR001471AP2/ERF domain
PRINTSPR003671.2E-5232243IPR001471AP2/ERF domain
PRINTSPR003671.2E-5270290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MLDLNLDADS PESTQYGDSY ADRKTSDGSG NRSETSTSSV INADADEDSC STRAFTLNFD  60
ILKVGSSGGG GGGDESTAVT KEFFPVAGDC GHLRGSSSRG WIDLSFDGSS QGEANLVAPA  120
PAPAPVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR  180
AAIKFRGVDA DINFTLGDYE EDMKQVQNLS KEEFVHILRR QSTGFSRGSS KYRGVTLHKC  240
GRWEARMGQF LGKKYVYLGL FDSEVEAARA YDKAAISSNG REAVTNFELS SYQNETNSET  300
NNQGGHDKLD LSLGMSLSPG NASKQNGRLF HYPSNTYETQ RGVSLTIGNE FMGKPVNAPL  360
PYGSSDHRAY WNGYNNPVEG RATEKRSEAE GGGMVSNWGW QGPGQTSAMR PQPPGAQPQL  420
FSVAAASSGF SNFRQQPPND NASASSLGYF YPQP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631232.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631232.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A078FMT30.0A0A078FMT3_BRANA; BnaC04g15640D protein
TrEMBLA0A0D3BU390.0A0A0D3BU39_BRAOL; Uncharacterized protein
STRINGBo4g070350.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.30.0related to AP2.7