PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013631195.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 300aa MW: 33905.1 Da PI: 4.366

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013631195.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.4e-18	55	108	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL++rqV vWFqNrRa++k XP_013631195.1 55 KKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQTRQVAVWFQNRRARWK 108 5568999**********************************************9 PP
2	HD-ZIP_I/II	126	1.7e-40	54	146	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglq+rqvavWFqnrRAR+ktkqlEkdy +Lk++yd+l+++ ++L++++e+L +e+++ XP_013631195.1 54 EKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQTRQVAVWFQNRRARWKTKQLEKDYGVLKTQYDSLRHNFDSLRSDNESLLQEISK 146 69*************************************************************************************999976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.2E-18	44	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.524	50	110	IPR001356	Homeobox domain
SMART	SM00389	1.9E-16	53	114	IPR001356	Homeobox domain
CDD	cd00086	4.26E-15	55	111	No hit	No description
Pfam	PF00046	2.4E-15	55	108	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.5E-19	57	117	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	81	90	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	85	108	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	90	106	IPR000047	Helix-turn-helix motif
Pfam	PF02183	8.2E-17	110	151	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MMKRLRSSDS VGGLISLCHT SSTDEQSPRR YGSMLEGYDE DEEEAIAEER GQTEKKRRLS 60 INQVKALEKN FELENKLEPE RKVKLAQELG LQTRQVAVWF QNRRARWKTK QLEKDYGVLK 120 TQYDSLRHNF DSLRSDNESL LQEISKLKSK LNGGEEEEEE NNAVAMESDF SVKEEEVSLP 180 ENITEEPPSS PPELLEHSDS FNYRSFTDLR DLLPLKAAAS SFAAAGSSDS GDSSAVLNEE 240 SSSNVTVTPT AVPGGSFFQF VKMEQTEDHD DFLSGEEACG FFSDEQPPSL HWYSAVDHWT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	110	RRARWKTKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bol.2397	1e-147	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013631195.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269\|PubMed:10527431, ECO:0000269\|PubMed:12065416, ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY336103	0.0	AY336103.1 Brassica napus homeodomain-leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013631195.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like
Refseq	XP_013725603.1	0.0	homeobox-leucine zipper protein ATHB-6
Swissprot	P46668	1e-154	ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6
TrEMBL	A0A0D3C176	0.0	A0A0D3C176_BRAOL; Uncharacterized protein
STRING	Bo4g149670.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	1e-132	homeobox protein 6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]