PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013631122.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 376aa MW: 41510.5 Da PI: 8.6001 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.9 | 1.7e-05 | 129 | 152 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ Cg+ F+ +L++Hi H XP_013631122.1 129 FPCTTCGEIFPKTTLLEHHIAIkH 152 89******************9877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51257 | 6 | 1 | 24 | No hit | No description |
PROSITE profile | PS50157 | 9.265 | 129 | 157 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 131 | 152 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.4E-11 | 154 | 375 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 4.3E-10 | 156 | 375 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MAARKLGSLL RQHFFSLFFL FVGCFFFSKG CDLRQKRRKK KLRTVTSGSG LSSSWTYLKR 60 VFLSTTRISK SRNQTHPNGP LTTLTSARSS QNSLVTLVQP DPETRTENGF SDISSSDSPP 120 FLPLRNEIFP CTTCGEIFPK TTLLEHHIAI KHAVSELVDG ESSTNIVKII FKSGWPEQGD 180 NKKIPEIHRI LKIHNSPKIL ARFEEYREFV KAKAARGSGN GRWDDERCVV DGNELLRFYC 240 STFMCSLGQN GSSGLCGHQY CSICGIIGSG FSPKLDGIAT FATGWRGHVA VPEEVEEEFG 300 FMNVKRAMLV CRVVAGRVGC DLIADDDVDK SGGGYDSLVG QGSGSKSGAL LRIDDEELLV 360 FNPRAVLPCF VIVYTV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 41 | RRKKKL |
2 | 36 | 42 | RRKKKLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013631122.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232577 | 0.0 | AC232577.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS012H21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013631122.1 | 0.0 | PREDICTED: uncharacterized protein LOC106336740 | ||||
Refseq | XP_013730387.1 | 0.0 | uncharacterized protein BNAC04G15010D isoform X1 | ||||
Refseq | XP_013730388.1 | 0.0 | uncharacterized protein BNAC04G15010D isoform X2 | ||||
TrEMBL | A0A0D3BTS1 | 0.0 | A0A0D3BTS1_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g061250.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7919 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29660.1 | 1e-169 | C2H2 family protein |