PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631111.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 446aa    MW: 49802 Da    PI: 5.3096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631111.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH452e-14304350455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ Le A+ YI++Lq
  XP_013631111.1 304 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLEDAISYIRELQ 350
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.3E-4946227IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.01E-18299358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.955300349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.14E-15303354No hitNo description
Gene3DG3DSA:4.10.280.102.7E-17303354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-12304350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-17306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNDLGWDEEE TSMANAVLGN SASDFLKTIS SSNQSLFLLM ETDDTLNKKL SSLVEWPNSE  60
NFSWNYAILW QQTVSRSGHR VLGWGDGCCR EPKEEESSVC NRRSSTLEEE EMRKRVLQKL  120
QRVFGESDED NYALSLERVT ATETFFLASM YFFFNHGEGG PGRCFASGRH VWWVDSGDDY  180
CFRSFMARSA GIRTVVMVNT EGGVVELGSV WSLPENLELV KSVQGLFTRR AEPPLVVHKL  240
FGQELNVVGS STNNQLRMSD SCNENRLAVG GGGGGGGGGA CAVEEKRPKK RGRKPANGRE  300
EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLE DAISYIRELQ ERVKIIEAVG  360
VRTVESQEVV EIQAREEEVV VRVISPLETH PASRIMQAMR NSEVSVMESK LSSAEETVFH  420
TFVVKSSNGS DPLTREKLIA AISTIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-26298353257Transcription factor MYC2
5gnj_B2e-26298353257Transcription factor MYC2
5gnj_E2e-26298353257Transcription factor MYC2
5gnj_F2e-26298353257Transcription factor MYC2
5gnj_G2e-26298353257Transcription factor MYC2
5gnj_I2e-26298353257Transcription factor MYC2
5gnj_M2e-26298353257Transcription factor MYC2
5gnj_N2e-26298353257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1285293KRPKKRGRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In seedlings, mainly expressed in root tips, cotyledons, hypocotyls, and leaves, as well as its guard cells. In adult plant, detectable in stems, flowers, and siliques. {ECO:0000269|PubMed:17828375}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631111.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631111.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like
SwissprotQ9ZPY81e-126AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A0D3C6K30.0A0A0D3C6K3_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CPJ80.0A0A3P6CPJ8_BRAOL; Uncharacterized protein
STRINGBo4g197150.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.11e-129ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]