PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013631061.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 479aa    MW: 52248.7 Da    PI: 7.077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013631061.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.4e-114570126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C+ff+rtG+C yG++C+++H+
  XP_013631061.1 45 PGERDCQFFLRTGQCGYGNTCRYNHP 70
                    5789*********************9 PP
2zf-CCCH36.39.6e-1291115327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C +f++tG CkyG++Ck++H++
  XP_013631061.1  91 QPDCEYFLKTGACKYGSTCKYHHPK 115
                     789********************96 PP
3zf-CCCH28.23.3e-09136159326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C+++++ G C++G  CkF+H+
  XP_013631061.1 136 EKSCPYYMQKGMCRFGVACKFHHP 159
                     667********************8 PP
4zf-CCCH35.41.8e-11275299327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++Crff+ tGtCkyGd Ck+ H++
  XP_013631061.1 275 RAECRFFMNTGTCKYGDDCKYTHPR 299
                     799********************95 PP
5zf-CCCH30.56.1e-10315339227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     + + C +fa  G+CkyG++CkFaH++
  XP_013631061.1 315 GKPACGNFAS-GFCKYGANCKFAHPM 339
                     7899******.*************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.0E-64471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.4554472IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-84670IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-54872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-45069IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89688116IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-688115IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-991115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-693116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-494114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6132161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.901133161IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4133160IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-6135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7272301IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-7273299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.187273300IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9275299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-7278300IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-7313339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.469313340IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-8315339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5319337IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MSETQQVQNS TGSIRSSENI EDTFRRMKVN EENMEGQSSQ YPDRPGERDC QFFLRTGQCG  60
YGNTCRYNHP LTHLPQGVFY QRDDLPERIG QPDCEYFLKT GACKYGSTCK YHHPKDRNGA  120
GPVLFNVLGY PMRQGEKSCP YYMQKGMCRF GVACKFHHPH PNPQPHNGSH ATTYGMSSFP  180
SVGFPYGGGL PMMSMPPPTY GVMPPPPANY GAMPPRPQVP HPQAYMPFVV PPPQGWSTYM  240
AGSNPIYNVK TQPDSSSSAS VPVAVTSHQH SVSERAECRF FMNTGTCKYG DDCKYTHPRE  300
RMLPPPPPNL PARPGKPACG NFASGFCKYG ANCKFAHPMP LNPYDGTGLT MPSLPTAYAS  360
PFTTHLPSRS DSNALSNGSK PAAENHTSET ERQNDKSEVQ DPSQLSDSDS TALSNGNKPS  420
AENETSETEG TEKSGVQGSS DSAALSNGNS GAESPSSETK KQEDHPSQPD KGKQESSDK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013631061.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013631061.10.0PREDICTED: zinc finger CCCH domain-containing protein 26-like
SwissprotO487720.0C3H26_ARATH; Zinc finger CCCH domain-containing protein 26
TrEMBLA0A0D3BSM80.0A0A0D3BSM8_BRAOL; Uncharacterized protein
STRINGBo4g045440.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-165zinc finger nuclease 2