PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013630765.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NAC | ||||||||
Protein Properties | Length: 175aa MW: 21122.4 Da PI: 9.6937 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 34.1 | 8.3e-11 | 5 | 144 | 8 | 128 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 P ++e v +yLk +++++ ++++++ d+y v+P++ + +++ ++ y F++r +++ ++ +sg W+ g+dk ++s+ + e XP_013630765.1 5 YPPEDETVGYYLKMMLDKRNKWPSNFLRSEDVYCVNPRTHFN-TQEpliLHDGRYLFVNRTESSG---KT-DGCDSGCWRIMGRDKLIKSEkSVE 94 5888999*********9999666689***********98742.22222255688****9988653...33.34579*************984445 PP NAM 99 lvglkktLvfy....................kgrapkgektdWvmheyrl 128 g k+++ f k++++ k Wvm+eyrl XP_013630765.1 95 ILGFKRVFRFCekneekpksffkfswekaeeKEKRRARDKRVWVMEEYRL 144 589999999997777666666666666554324444456899******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 20.155 | 1 | 160 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-22 | 5 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-9 | 5 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MTMIYPPEDE TVGYYLKMML DKRNKWPSNF LRSEDVYCVN PRTHFNTQEP LILHDGRYLF 60 VNRTESSGKT DGCDSGCWRI MGRDKLIKSE KSVEILGFKR VFRFCEKNEE KPKSFFKFSW 120 EKAEEKEKRR ARDKRVWVME EYRLASKWKQ DYVICKIRLL NPNPLEFMLS NHVRG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013630765.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE601751 | 5e-31 | HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624280.1 | 1e-129 | PREDICTED: uncharacterized protein LOC106330344 | ||||
Refseq | XP_013630765.1 | 1e-129 | PREDICTED: uncharacterized protein LOC106336473 | ||||
TrEMBL | A0A0D3AAE0 | 1e-127 | A0A0D3AAE0_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g093090.1 | 1e-128 | (Brassica oleracea) | ||||
STRING | Bo3g081220.1 | 1e-128 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16194 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60240.1 | 3e-66 | NAC family protein |