PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013630382.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 191aa MW: 22396.3 Da PI: 5.1649 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 22.8 | 1.2e-07 | 11 | 49 | 3 | 41 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i + + r+ tf R++ + K +EL vLCd++ + +i+ XP_013630382.1 11 ITDGRAREATFNLRKEELNQKLYELHVLCDVDTCAVIYN 49 6777899***************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 13.834 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.1E-7 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.15E-19 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.14E-18 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.3E-10 | 11 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MGKKKMDLTY ITDGRAREAT FNLRKEELNQ KLYELHVLCD VDTCAVIYNQ YDPNPEVWPS 60 NSEVKSVLEK FEMLSEKEKT CRSVNHEEFL HQMIEKARTK RQKQNDQNKE KYMRELMFAF 120 LSGNMEDLSL NNDDRSELCS FIDQYLKELV QHKNQTLNNP NFEIGQSSSM ALDLNIAQTS 180 IAEAVRNLYI P |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013630382.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013630382.1 | 1e-142 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A0D3AA30 | 1e-133 | A0A0D3AA30_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g088030.1 | 1e-134 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28700.1 | 2e-63 | AGAMOUS-like 46 |