PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629841.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family BBR-BPC
Protein Properties Length: 229aa    MW: 25446.4 Da    PI: 10.3655
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629841.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind242.53e-7437229103301
       GAGA_bind 103 sgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidl 196
                     + t+ id +q    pq e+     l+++  l  +p++e  +++  ++k+++  +++k++++k ++kk+  +++k  +k+ s  ++ k+ekk+ d+
  XP_013629841.1  37 PRTTGIDLSQP---PQAEPAELAmLPQQVRLFPPPTREYIHDV--EQKSSTMLSPSKALKPKPQSKKR--SAPKTPKKTLSI-PEIKREKKNPDI 123
                     44555554444...77777777734444455555555444333..33444457778888888887777..444444444444.689********* PP

       GAGA_bind 197 .vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290
                      v++  s+D s++P+PvCsCtG++++CYkWG+GGWqS+CCt++iS++PLP+st+r+g+R+agrKmS+ga+ klL +La+eGydl  pvDL++hWA
  XP_013629841.1 124 nVVDISSFDVSGVPPPVCSCTGVPKVCYKWGMGGWQSSCCTISISTFPLPMSTTRPGTRLAGRKMSNGAYVKLLMRLAGEGYDLTFPVDLRNHWA 218
                     889999***************************************************************************************** PP

       GAGA_bind 291 kHGtnkfvtir 301
                     +HGtnkfvti+
  XP_013629841.1 219 RHGTNKFVTIK 229
                     **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.2E-791229IPR010409GAGA-binding transcriptional activator
PfamPF062172.5E-6578229IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDPYLSRNHM QPATSTSKDT GLPTSNPHWF HSYFPVPRTT GIDLSQPPQA EPAELAMLPQ  60
QVRLFPPPTR EYIHDVEQKS STMLSPSKAL KPKPQSKKRS APKTPKKTLS IPEIKREKKN  120
PDINVVDISS FDVSGVPPPV CSCTGVPKVC YKWGMGGWQS SCCTISISTF PLPMSTTRPG  180
TRLAGRKMSN GAYVKLLMRL AGEGYDLTFP VDLRNHWARH GTNKFVTIK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629841.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629841.11e-170PREDICTED: protein BASIC PENTACYSTEINE7
SwissprotO822861e-112BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A0D3B5031e-169A0A0D3B503_BRAOL; Uncharacterized protein
STRINGBo3g028310.11e-170(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136742127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-115basic pentacysteine 7