PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013629805.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 673aa    MW: 73540.7 Da    PI: 7.0135
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013629805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093924291954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  XP_013629805.1 392 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 429
                     554459******************************88 PP
2BELL123.58.8e-40251322172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqe+q+kkakL s+l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi
  XP_013629805.1 251 ERQEIQMKKAKLSSMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 322
                     79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-74171320IPR006563POX domain
PfamPF075265.7E-46177319IPR006563POX domain
PROSITE profilePS5007112.26370433IPR001356Homeobox domain
CDDcd000869.67E-13373434No hitNo description
SMARTSM003892.3E-9373437IPR001356Homeobox domain
SuperFamilySSF466895.99E-17374440IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-29376439IPR009057Homeodomain-like
PfamPF059202.8E-18390429IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MAAYFHGNPP EFSAGTDGGL QTLILMNPTT YVPYTQQDDD SNNSSNNNNN TNNNSFVFLD  60
SHAPPQNANQ QFVGIPLSGH EAASITAADN ISVLHGYPPR VQCSLYGSHQ VDPTHHQAAC  120
ETPRAQRGLS LTLSSQQQKQ QHRQTLHHVG FGSGPGEDIR VGSGSTASGV TNGIANLVSS  180
KYLKAAQELL DEVVKADSND INTKSQLFSS KKGTSVTDTK AVGESSTGAR EGSDGGGEAS  240
GKRTMELGTT ERQEIQMKKA KLSSMLHEVE QRYRQYHQQM QMVISSFEQA AGIGSAKSYT  300
SLALKTISRQ FRCLKEAIAG QIKAANKSLG EEDSVSGVGR FEGSRLKFVD HHLRQQRALQ  360
QLGMIQHPSN NAWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS  420
NWFINARVRL WKPMVEEMYA EEMKEQGKNM GSMEKTPNLD ENIDDSASKS TSNQEKIPMG  480
GGGLDDYHLN PSHNGDLEGV TGMQGSPKRL RTSDDTMMQP INEGFSSNEK ITMKILEERQ  540
GIRSDGGYPF MGSFVQYQMD EMSRFNVAVS DQELLTQRFS GNINGVSLTL GLPHCDSLSS  600
THHQGFMQTH HGIQIGRSVK IGETEEYGNS AINGGSGSAA TAHSSAAAAA AYNGMNIQNQ  660
KRYVAQLLPD FVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-17379436158Homeobox protein Meis1
4xrs_B7e-17379436158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013629805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013629805.10.0PREDICTED: BEL1-like homeodomain protein 1 isoform X2
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0D3B5560.0A0A0D3B556_BRAOL; Uncharacterized protein
STRINGBo3g029830.10.0(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.30.0BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]